PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA21755
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C2H2
Protein Properties Length: 394aa    MW: 44067.5 Da    PI: 7.6377
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA21755genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.33.3e-07237259123
                                EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                + C+ Cgk F+r  nL+ H+r H
  Tp57577_TGAC_v2_mRNA21755 237 HYCQVCGKGFKRDANLRMHMRAH 259
                                68*******************99 PP
2zf-C2H211.10.0012327350123
                                EEETTTT.EEESSHHHHHHHHHHT CS
                    zf-C2H2   1 ykCpdCg.ksFsrksnLkrHirtH 23 
                                y+C+ C+ k Fs  s+L++H + +
  Tp57577_TGAC_v2_mRNA21755 327 YVCKRCNlKQFSVLSDLRTHEKHC 350
                                9*******************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.23E-6235261No hitNo description
SMARTSM003550.0034237259IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.653237264IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.4E-7237293IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280239259IPR007087Zinc finger, C2H2
SMARTSM00355150289322IPR015880Zinc finger, C2H2-like
SMARTSM0035524327349IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MTTPPSFEIG NQGMQMFPMV IEDLMPLPNS MEGISGSPSN SLLFNLSILK EKFNQVQNLV  60
GVILSPNQQD SSTNSMAISN MNSTIQEIIV TSTSIMFTCQ QIALGNFPQG NNSTTCTNQE  120
FQKQQSNNIQ SSFGNNNTNI DLRGQSLLDS NNESQALDWF GERYKLEHDI DDQKFGHEIS  180
ETNNSIKGSN EDILTKNNCD RGDTSLKFGP SNAQTGVECG EDIVELDATD LLAKYTHYCQ  240
VCGKGFKRDA NLRMHMRAHG DEYKSSAALS NPINKSNSDY LMSMKNKKYS CPQEGCRWNQ  300
KHAKFQPLKS LICAKNHYKR SHCPKMYVCK RCNLKQFSVL SDLRTHEKHC GDLRWQCSCG  360
TTFSRKDKLI GHVGLFVGHH PVINGLSYST HTN*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Together with STOP1, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:23935008}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00522DAPTransfer from AT5G22890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA21755
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024631543.10.0protein SENSITIVE TO PROTON RHIZOTOXICITY 2-like
SwissprotQ0WT241e-104STOP2_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 2
TrEMBLA0A2K3N0G40.0A0A2K3N0G4_TRIPR; Protein sensitive to proton rhizotoxicity 1-like
STRINGXP_004487557.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80993045
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.11e-106C2H2 family protein