 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Tp57577_TGAC_v2_mRNA21656 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
|
| Family |
LBD |
| Protein Properties |
Length: 230aa MW: 24881.4 Da PI: 8.2697 |
| Description |
LBD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Tp57577_TGAC_v2_mRNA21656 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF260 | 99.3 | 3.8e-31 | 2 | 103 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgv 79
+C++C+vlr++C+++C+l+p++ p++q +++ +v+k+FG++ ++++++++p+ +r+++++sl++eA+ r+ +Pv+Gavg+
Tp57577_TGAC_v2_mRNA21656 2 SCNGCRVLRKGCSESCILRPCIqwidtPEAQGHATVFVAKFFGRADLMSFISNVPKPQRPALFQSLLFEACGRTVNPVNGAVGL 85
6*********************************************************************************** PP
DUF260 80 ilklqqqleqlkaelall 97
+++++++++q+++e++l+
Tp57577_TGAC_v2_mRNA21656 86 LWTGNWHVCQAAVETVLR 103
************999876 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 230 aa
Download sequence Send
to blast |
MSCNGCRVLR KGCSESCILR PCIQWIDTPE AQGHATVFVA KFFGRADLMS FISNVPKPQR 60
PALFQSLLFE ACGRTVNPVN GAVGLLWTGN WHVCQAAVET VLRGGTLKPI PELLGSDAVA 120
STVDDSSEGE VTCNDARRSR DVKSSFPFMS SGGKRKRSGE VAKVQATTDL NLRLMPQNAL 180
TNGCRKEIRR SGTPSMNSEE SVTTMTCLES GIGDHYVHDG DRKVLNLFV*
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | BT143032 | 0.0 | BT143032.1 Medicago truncatula clone JCVI-FLMt-1O21 unknown mRNA. |
