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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA21217 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | ERF | ||||||||
Protein Properties | Length: 177aa MW: 19252 Da PI: 9.9507 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.1 | 1.2e-19 | 59 | 109 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++GVr+++ +g+++AeIrdp +ng +r++lg+f tae+Aa a+++a+ +++g Tp57577_TGAC_v2_mRNA21217 59 HFRGVRQRP-WGKFAAEIRDPAKNG--ARVWLGTFETAEDAALAYDRAAYRMRG 109 79*******.***********9987..*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 4.16E-32 | 58 | 117 | No hit | No description |
PROSITE profile | PS51032 | 23.788 | 59 | 117 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.3E-13 | 59 | 109 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.9E-32 | 59 | 117 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.27E-23 | 59 | 119 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 2.9E-39 | 59 | 123 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.0E-11 | 60 | 71 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.0E-11 | 83 | 99 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001944 | Biological Process | vasculature development | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 177 aa Download sequence Send to blast |
WVPSLEVGSP ESISSGFPLE LTVKPEPDVM PVEIIPEVES TTEQVVLEVL KAAPVKGKHF 60 RGVRQRPWGK FAAEIRDPAK NGARVWLGTF ETAEDAALAY DRAAYRMRGS RALLNFPLRV 120 NSGEPDPVRI TSKRGSPECN SPAKRRKVMT SQSGLKTGQV GNQVEQCTRG GQLLVT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-44 | 55 | 124 | 1 | 70 | ATERF1 |
3gcc_A | 2e-44 | 55 | 124 | 1 | 70 | ATERF1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as a transcriptional activator and may be involved in disease resistance pathways. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase cascade, and to be influenced by methyl-jasmonate. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:10792818, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA21217 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by ethephon (ethylene-releasing compound) in buds and to a lower extent in leaves. Strongly induced by cycloheximide and mechanical stimuli. Wounding leads to a both local and systemic expression, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Wound induction is reduced by methyl-jasmonate. Induction by purified xylanase from Trichoderma viride (TvX) and another elicitor from Phytophthora infestans (PiE), that appears to be mediated by both protein kinases and protein phosphatases. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:12090623, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JF965421 | 1e-124 | JF965421.1 Medicago sativa ethylene response factor 11 (ERF11) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003608658.1 | 7e-95 | ethylene-responsive transcription factor 2 | ||||
Swissprot | Q40479 | 6e-54 | ERF2_TOBAC; Ethylene-responsive transcription factor 2 | ||||
TrEMBL | A0A2K3L4J1 | 1e-120 | A0A2K3L4J1_TRIPR; Ethylene-responsive transcription factor 1a-like protein | ||||
STRING | AES90855 | 3e-94 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2239 | 33 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17500.1 | 7e-43 | ethylene responsive element binding factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA21217 |
Publications ? help Back to Top | |||
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