PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA20973
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB
Protein Properties Length: 388aa    MW: 44052 Da    PI: 5.0715
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA20973genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.94.1e-171461148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                               +grWT+eEde+l ++vk  G g+W++ ++  g+ R++k+c++rw +yl
  Tp57577_TGAC_v2_mRNA20973 14 KGRWTAEEDEILTQYVKTNGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61
                               79******************************99************97 PP
2Myb_DNA-binding51.81.8e-1667112148
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                rg+ ++eE+ +++++++ +G++ W++Ia++++ gRt++++k++w+++l
  Tp57577_TGAC_v2_mRNA20973  67 RGNISAEEESIIIKLHASFGNR-WSLIASHLP-GRTDNEIKNYWNSHL 112
                                7899******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-21564IPR009057Homeodomain-like
PROSITE profilePS5129416.989961IPR017930Myb domain
SuperFamilySSF466891.54E-2811108IPR009057Homeodomain-like
SMARTSM007171.6E-121363IPR001005SANT/Myb domain
PfamPF002496.3E-151461IPR001005SANT/Myb domain
CDDcd001674.47E-91661No hitNo description
PROSITE profilePS5129424.73762116IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.5E-2565116IPR009057Homeodomain-like
SMARTSM007175.5E-1766114IPR001005SANT/Myb domain
PfamPF002499.6E-1567112IPR001005SANT/Myb domain
CDDcd001674.66E-1171112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MGRAPCCEKV GLKKGRWTAE EDEILTQYVK TNGEGSWRSL PKNAGLLRCG KSCRLRWINY  60
LRYDLKRGNI SAEEESIIIK LHASFGNRWS LIASHLPGRT DNEIKNYWNS HLSRKVFSFK  120
GTATNYNNSN NNKEMPLQQG NVVDTPHKRR GGRTSRWAMK KNKRYAQNIF QSPKLQRSEP  180
AAITLPPTPT FESEKLSTRV IKEFKVMDPE NGPSSSGEVE DGPSELQLPC IDGKSIEIDG  240
DRKLGPYPKV INAGEVDFND NVMDTCEVEE ERKSDDENVV VINERVGDKG TNTKGTRDLE  300
SNSNVANYGS NSNEELNSSS MDLDLDDNLD WESVMPLLNQ KGESVSWDQS ENMLTWLWED  360
DEWEKDFQKC REIDPQKLNA TVSWFLS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-23121165108B-MYB
1h8a_C9e-231211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA20973
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004494411.10.0transcription factor MYB11-like
TrEMBLA0A2K3P6820.0A0A2K3P682_TRIPR; Transcription factor MYB 12-like protein (Fragment)
STRINGXP_004494411.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49330.14e-75myb domain protein 111