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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Tp57577_TGAC_v2_mRNA20937 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
|
| Family |
bHLH |
| Protein Properties |
Length: 639aa MW: 71081.2 Da PI: 7.0946 |
| Description |
bHLH family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Tp57577_TGAC_v2_mRNA20937 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 40.7 | 4.3e-13 | 473 | 519 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
+h e+Er+RR+++N++f Lr ++P+ + K++Ka+ L A+ YI++Lq
Tp57577_TGAC_v2_mRNA20937 473 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAISYINELQ 519
799***********************66......******************9 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 639 aa
Download sequence Send
to blast |
MKIEVGLGGS RLWNEDEKAM VIEVLGVNAF DYLVKNSVSN ENLLMAIGNG ENLQNKLSDL 60
VERSNLSNFS WNYAIFWQIS QSKFGDWVLG WGDGCCREPK EEEEKENFGM KSFLSHNVVE 120
NEKQQRLRKR VLQKLHTTFG GSDEDNYAFG LDHVTDTEMF FLASMYFSFP NGHGGPGKCF 180
ASGKHLWLCD ALKSNSSDYC VRSHLAKSVG FQTIVLVPTD LGVVELGSVR MVGESFELLQ 240
TIKSVFSSQS SLSRVKSISS LDETGDENAP FSSLKVGEII KNNNSFGNLH RHQSNNHGRV 300
EGIGVPKIFG QDLNSVTNFR EKLAIRKMXX XXXXXXXXXX XXXXXXSRPN GNGISFPNGV 360
HGSSWRGSQV VKQHVPADVF SPRPPSTSNV PELANGGGRH DFVLNNFQQQ RNQQMQIDFS 420
GATSRPSVRS IVGESELSDV EASCREDKPS PSDDRRPRKR GRKPANGREE PLNHVEAERQ 480
RREKLNQRFY ALRAVVPNIS KMDKASLLGD AISYINELQA KLKLMESERE QFGSTSKDGS 540
SSILPTNPIT ENHQSKAPDV EIQAAQDGVI VKVSCPIDVH PISKLIQSFN DAEISILESK 600
LNATNDTVFH TFIIKSQSSE QLTKEKLIAA FSRESNSL*
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| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 5gnj_A | 1e-29 | 467 | 532 | 2 | 67 | Transcription factor MYC2 |
| 5gnj_B | 1e-29 | 467 | 532 | 2 | 67 | Transcription factor MYC2 |
| 5gnj_E | 1e-29 | 467 | 532 | 2 | 67 | Transcription factor MYC2 |
| 5gnj_F | 1e-29 | 467 | 532 | 2 | 67 | Transcription factor MYC2 |
| 5gnj_G | 1e-29 | 467 | 532 | 2 | 67 | Transcription factor MYC2 |
| 5gnj_I | 1e-29 | 467 | 532 | 2 | 67 | Transcription factor MYC2 |
| 5gnj_M | 1e-29 | 467 | 532 | 2 | 67 | Transcription factor MYC2 |
| 5gnj_N | 1e-29 | 467 | 532 | 2 | 67 | Transcription factor MYC2 |
| Search in ModeBase |
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 454 | 462 | RRPRKRGRK |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}. |
