PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA20932
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family ARF
Protein Properties Length: 685aa    MW: 77227.5 Da    PI: 6.7087
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA20932genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.56e-24130230198
                                EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT CS
                         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkeg 77 
                                f+k+lt sd++++g +++ +k+a+e+       +   + +++l+ +d++g +W++k+iyr++++r++lt+GW+ Fv +++L +g
  Tp57577_TGAC_v2_mRNA20932 130 FCKILTASDTSTHGGFSVLRKHATEClppldmtQ--ATPTQELVAKDLHGFEWKFKHIYRGQPRRHLLTTGWSTFVASKRLVAG 211
                                99****************************9543..445569****************************************** PP

                                -EEEEEE-SSSEE..EEEEE- CS
                         B3  78 DfvvFkldgrsefelvvkvfr 98 
                                D +vF   + ++++l+v+v+r
  Tp57577_TGAC_v2_mRNA20932 212 DAFVFL--RGEDGQLRVGVRR 230
                                ******..4499999****98 PP
2Auxin_resp97.81.6e-32256336183
                 Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                                a+ha+ t+++F v+Y+Pr+  s+F+v ++k+++a++  +++vGmRfkm+fe++ds+err+sGt+vgv dl+   W+nS+WrsLk
  Tp57577_TGAC_v2_mRNA20932 256 ASHALMTQTMFVVYYKPRT--SQFIVGLNKYLEAVNnYRFTVGMRFKMRFEGDDSPERRFSGTIVGVGDLSA-GWSNSQWRSLK 336
                                6899**************6..9*************9789******************************766.*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.3E-41121245IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.44E-39121259IPR015300DNA-binding pseudobarrel domain
CDDcd100171.61E-20128230No hitNo description
SMARTSM010198.1E-23130232IPR003340B3 DNA binding domain
PfamPF023626.0E-22130230IPR003340B3 DNA binding domain
PROSITE profilePS5086312.111130232IPR003340B3 DNA binding domain
PfamPF065072.2E-30256336IPR010525Auxin response factor
SuperFamilySSF542771.96E-12566647No hitNo description
PfamPF023093.9E-5568607IPR033389AUX/IAA domain
PROSITE profilePS5174524.583571652IPR000270PB1 domain
PfamPF023099.6E-6613654IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 685 aa     Download sequence    Send to blast
MAHLECNLRA PGTSQQEKGE KNDELYGELW KLCAGPLVDV PNISARVYYF PQGHMEQLQA  60
STNQELNQEI PHFNLPSKML CRVVNLRLMA EQETDEVYAC IALLPESDQT EPVDPELIPP  120
ESPKQKFHSF CKILTASDTS THGGFSVLRK HATECLPPLD MTQATPTQEL VAKDLHGFEW  180
KFKHIYRGQP RRHLLTTGWS TFVASKRLVA GDAFVFLRGE DGQLRVGVRR MSKQHCPMPS  240
SVISSQSMNL GVLATASHAL MTQTMFVVYY KPRTSQFIVG LNKYLEAVNN YRFTVGMRFK  300
MRFEGDDSPE RRFSGTIVGV GDLSAGWSNS QWRSLKVQWD EAATIPRPER VSPWEIEPFT  360
ASPSLNVTQP SAXXXXXXXX XXXXXXXXXX XXXXXXXVML LFFRFWYPGA GSSQAHEHTQ  420
LVGASEVQAK ENHIVTSRVS VEGIWPNSPY MNVTSNPYAS RLVDGPTCDH PVKDANKTSN  480
PLDCWLFGVN LNKNNKCNNV NPCLEKEHGF PNLANVTTSG PKESILTNAC ETEKVQSPNN  540
SLSTKGQQKK IICDVSSNEW QNKLATVPSM RTRTKVQMQG VAVGRALDLT MLSGYDELID  600
EVEKLFDIKG ELRSQNKWRV TFTDNENDMM LVGDDPWPEF CNIVKKIFIC SKEDLKKMKC  660
KLPNSSLEME ETLFSLDSQN RDEN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-161133617357Auxin response factor 1
4ldw_A1e-161133617357Auxin response factor 1
4ldw_B1e-161133617357Auxin response factor 1
4ldx_A1e-161133617357Auxin response factor 1
4ldx_B1e-161133617357Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA20932
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013444604.10.0auxin response factor 18
SwissprotQ9XED80.0ARFI_ARATH; Auxin response factor 9
TrEMBLA0A2K3NZ280.0A0A2K3NZ28_TRIPR; Auxin response factor
STRINGXP_004510661.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15113396
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61830.10.0auxin response factor 18