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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA20906 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | TCP | ||||||||
Protein Properties | Length: 211aa MW: 24124.3 Da PI: 12.0881 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 106.8 | 3.3e-33 | 45 | 105 | 5 | 65 |
TCP 5 kdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt 65 ++++++hTkv+gR+RRvR++ +caar+F+L++eLG+ +d++tieWLl+qa+pai++ tg Tp57577_TGAC_v2_mRNA20906 45 SRSTKDRHTKVNGRGRRVRMPPLCAARVFQLTRELGHRSDGETIEWLLRQAEPAIIAVTGX 105 579********************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 8.1E-29 | 47 | 106 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.342 | 48 | 102 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MSSQVVFQTF SQSETKPSTV STTTVATTSS DPNAQLTTVK RKTSSRSTKD RHTKVNGRGR 60 RVRMPPLCAA RVFQLTRELG HRSDGETIEW LLRQAEPAII AVTGXXXXXX XXXXXXXXXX 120 PVRFQQPRRR LLSPGRLCPA MLLRRCHLLV PAVVECLLLL LSRYSSRVAG LIYVRRLEWS 180 MLYRIGTIIC RSRRCCCNRV RWRRISKKNL * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA20906 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC153725 | 1e-47 | AC153725.3 Medicago truncatula clone mth2-78c5, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028776076.1 | 2e-43 | transcription factor TCP11 | ||||
TrEMBL | A0A2K3PDU8 | 1e-65 | A0A2K3PDU8_TRIPR; Transcription factor TCP15 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3819 | 33 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G58100.1 | 2e-25 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA20906 |