PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA20451
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB
Protein Properties Length: 364aa    MW: 41967.8 Da    PI: 4.7197
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA20451genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.36.4e-171461148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                               rgrWTteEde+l ++++  G g+W++ ++  g+ R++k+c++rw +yl
  Tp57577_TGAC_v2_mRNA20451 14 RGRWTTEEDEILTKYIQTNGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61
                               8*******************************99************97 PP
2Myb_DNA-binding55.31.6e-1767112148
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                rg+ ++eE++ +v++++ +G++ W+ Ia++++ gRt++++k++w+++l
  Tp57577_TGAC_v2_mRNA20451  67 RGNISKEEEDTIVKLHTSYGNR-WSMIASHLP-GRTDNEIKNHWNSHL 112
                                7899******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-21564IPR009057Homeodomain-like
PROSITE profilePS5129415.605961IPR017930Myb domain
SuperFamilySSF466892.38E-2811108IPR009057Homeodomain-like
SMARTSM007173.1E-121363IPR001005SANT/Myb domain
PfamPF002491.6E-141461IPR001005SANT/Myb domain
CDDcd001675.10E-81661No hitNo description
PROSITE profilePS5129426.11162116IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.6E-2565116IPR009057Homeodomain-like
SMARTSM007173.4E-1666114IPR001005SANT/Myb domain
PfamPF002493.0E-1467112IPR001005SANT/Myb domain
CDDcd001673.36E-1071112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0051555Biological Processflavonol biosynthetic process
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MGRAPCCQKV GLKRGRWTTE EDEILTKYIQ TNGEGSWRSL PKNAGLLRCG KSCRLRWINY  60
LRTDLKRGNI SKEEEDTIVK LHTSYGNRWS MIASHLPGRT DNEIKNHWNS HLSRKIYSFS  120
KISNTTEPKI IDIPPPKRKC GRTSRWAMKK NKNYKKQIVT NTNKTVTNIE DTVTIETEVQ  180
IPRTPSLENE VEVVKTTYEE EKEDTCDYES CDDIIVLSEL LDSINEDSGM ENCLVKTCGT  240
VSNLSEEREM VGDMVMGEEN DVDVCLKNHK LDSCDSSVNN YQSSSNNGEI SDEWSSMGLN  300
FDHDDKWNWE SVMEFNIFDD DNDDSFREHK EKILKLLYED DDNKMLGEID PQKQNDLIAW  360
FLS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-22121162105MYB PROTO-ONCOGENE PROTEIN
1h88_C3e-221211656159MYB PROTO-ONCOGENE PROTEIN
1h89_C3e-221211656159MYB PROTO-ONCOGENE PROTEIN
1h8a_C1e-221211625128MYB TRANSFORMING PROTEIN
1mse_C1e-22121162105C-Myb DNA-Binding Domain
1msf_C1e-22121162105C-Myb DNA-Binding Domain
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00627PBMTransfer from PK06182.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA20451
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF4684911e-149EF468491.1 Medicago truncatula MYB transcription factor MYB112 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003591445.31e-168transcription factor MYB11
TrEMBLA0A2U8UG270.0A0A2U8UG27_TRIRP; MYB transcription factor MYB112 (Fragment)
STRINGGLYMA02G01740.11e-109(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49330.18e-75myb domain protein 111