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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA20431 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | NAC | ||||||||
Protein Properties | Length: 224aa MW: 25750.2 Da PI: 6.154 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 107.4 | 1.7e-33 | 12 | 159 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...........................kvkaeeke 57 lppGfrF+Ptdeelvv++L++k++ +++ +vi+++++y+++Pw+L+ ++ e ++ Tp57577_TGAC_v2_mRNA20431 12 LPPGFRFDPTDEELVVHFLQRKATLLPCHP-HVIPDLHLYSYDPWQLHGilvytiyylfvfflavdysgrsaivvgRALLEGNK 94 79*************************999.89**************9558999999999999999888877765533347889 PP NAM 58 wyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykg.rapkgektdWvmheyrl 128 wy++s+r +nr+t++gyWkatg +++v+++ ++++vg+kk +vf+ g + +g kt+W+m+e+ l Tp57577_TGAC_v2_mRNA20431 95 WYYYSRRT--------QNRVTDNGYWKATGMEEAVICStNNKKVGMKKHFVFHVGeSPASGIKTNWIMQEFCL 159 99999874........589************999998868899**********883556899*********87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.06E-38 | 9 | 57 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 40.77 | 12 | 191 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.2E-22 | 13 | 158 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 7.06E-38 | 85 | 191 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MGDKNDIYNV NLPPGFRFDP TDEELVVHFL QRKATLLPCH PHVIPDLHLY SYDPWQLHGI 60 LVYTIYYLFV FFLAVDYSGR SAIVVGRALL EGNKWYYYSR RTQNRVTDNG YWKATGMEEA 120 VICSTNNKKV GMKKHFVFHV GESPASGIKT NWIMQEFCLS DSASSSAKSS KRKSKPIKDY 180 SKWVICRVYE QNEDGDDGMD QLSYLDEVFL SLDDLDEISL PNY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 5e-31 | 3 | 192 | 11 | 169 | NAC domain-containing protein 19 |
3swm_B | 5e-31 | 3 | 192 | 11 | 169 | NAC domain-containing protein 19 |
3swm_C | 5e-31 | 3 | 192 | 11 | 169 | NAC domain-containing protein 19 |
3swm_D | 5e-31 | 3 | 192 | 11 | 169 | NAC domain-containing protein 19 |
3swp_A | 5e-31 | 3 | 192 | 11 | 169 | NAC domain-containing protein 19 |
3swp_B | 5e-31 | 3 | 192 | 11 | 169 | NAC domain-containing protein 19 |
3swp_C | 5e-31 | 3 | 192 | 11 | 169 | NAC domain-containing protein 19 |
3swp_D | 5e-31 | 3 | 192 | 11 | 169 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA20431 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019440373.1 | 1e-98 | PREDICTED: NAC domain-containing protein 104-like | ||||
Refseq | XP_019440374.1 | 1e-98 | PREDICTED: NAC domain-containing protein 104-like | ||||
Swissprot | Q8GWK6 | 4e-70 | NC104_ARATH; NAC domain-containing protein 104 | ||||
TrEMBL | A0A2K3LLY1 | 1e-126 | A0A2K3LLY1_TRIPR; NAC domain-containing protein | ||||
STRING | GLYMA08G19300.1 | 1e-88 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1736 | 33 | 95 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64530.1 | 1e-69 | xylem NAC domain 1 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA20431 |
Publications ? help Back to Top | |||
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