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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA20355 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | C2H2 | ||||||||
Protein Properties | Length: 150aa MW: 17018 Da PI: 9.8118 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14 | 0.00014 | 43 | 65 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC C+ksFs+ L H ++H Tp57577_TGAC_v2_mRNA20355 43 YKCDLCSKSFSSGNALGGHKSSH 65 9***********99999998888 PP | |||||||
2 | zf-C2H2 | 13.8 | 0.00017 | 84 | 104 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C+ C+k Fs++ L H+r+H Tp57577_TGAC_v2_mRNA20355 84 CQVCKKFFSSNKALYGHMRSH 104 77******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 8.4E-4 | 40 | 69 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 5.39E-7 | 41 | 104 | No hit | No description |
Pfam | PF13912 | 1.4E-11 | 43 | 68 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 11.967 | 43 | 70 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.067 | 43 | 65 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 45 | 65 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.66 | 81 | 109 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.99 | 82 | 104 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 1.9E-5 | 83 | 105 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 83 | 104 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 150 aa Download sequence Send to blast |
MRKKVTPSST FHNPFSSYNY HDDNNNKHTK INAANLQGST RMYKCDLCSK SFSSGNALGG 60 HKSSHKKQKT HHHDDIEKQE HSCCQVCKKF FSSNKALYGH MRSHKRDGKK VIHPLPTISS 120 SLEHNNDVDE DRFLLRASVL DLSNYFPQG* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA20355 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027189393.1 | 1e-21 | uncharacterized protein LOC113786250 | ||||
TrEMBL | A0A2K3LXB1 | 3e-70 | A0A2K3LXB1_TRIPR; C2H2 zinc finger protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60580.1 | 1e-06 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA20355 |