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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Tp57577_TGAC_v2_mRNA2021 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family |
MIKC_MADS |
Protein Properties |
Length: 249aa MW: 28795.8 Da PI: 9.6173 |
Description |
MIKC_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Tp57577_TGAC_v2_mRNA2021 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 97.1 | 7.6e-31 | 19 | 69 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
krienk+nrqvtfskRr g+lKKA+E+SvLCdaeva+i+fs++gkly+yss
Tp57577_TGAC_v2_mRNA2021 19 KRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLYDYSS 69
79***********************************************96 PP
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2 | K-box | 107.4 | 1.6e-35 | 87 | 184 | 3 | 100 |
K-box 3 kssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekel 87
+++ + ++++ +e++ e+akLk+++e Lqr+qR+++GedL+ LslkeLq+LeqqL++slk+iRs+Kn++++e+i+elqkk k+l
Tp57577_TGAC_v2_mRNA2021 87 ERQLVTNDQSPNENWVLEHAKLKARMEVLQRNQRNYMGEDLDGLSLKELQNLEQQLDSSLKHIRSRKNQVMYESISELQKKDKAL 171
567777888999************************************************************************* PP
K-box 88 qeenkaLrkklee 100
qe+n+ L+kk++e
Tp57577_TGAC_v2_mRNA2021 172 QEHNNLLSKKIKE 184
**********987 PP
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Protein Features
? help Back to Top |
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Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
SMART | SM00432 | 4.9E-40 | 11 | 70 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 32.422 | 11 | 71 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.06E-34 | 12 | 102 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.61E-41 | 12 | 85 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 13 | 67 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.7E-31 | 13 | 33 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.0E-25 | 20 | 67 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.7E-31 | 33 | 48 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.7E-31 | 48 | 69 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 8.7E-30 | 93 | 182 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 17.189 | 98 | 188 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0010077 | Biological Process | maintenance of inflorescence meristem identity |
GO:0010154 | Biological Process | fruit development |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 249 aa
Download sequence Send
to blast |
LINNHIVGKK MGRGRVQLKR IENKINRQVT FSKRRSGLLK KAHEISVLCD AEVALIVFST 60 KGKLYDYSSD PCMERILERY ERYSYTERQL VTNDQSPNEN WVLEHAKLKA RMEVLQRNQR 120 NYMGEDLDGL SLKELQNLEQ QLDSSLKHIR SRKNQVMYES ISELQKKDKA LQEHNNLLSK 180 KIKEKEKQLA QEEQQNSMEV NPIETQQLES MIIPAGGSLQ GKFNEENAAK TQGSAINLPS 240 WMIRPINE*
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1tqe_P | 2e-21 | 11 | 84 | 1 | 73 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 2e-21 | 11 | 84 | 1 | 73 | Myocyte-specific enhancer factor 2B |
1tqe_R | 2e-21 | 11 | 84 | 1 | 73 | Myocyte-specific enhancer factor 2B |
1tqe_S | 2e-21 | 11 | 84 | 1 | 73 | Myocyte-specific enhancer factor 2B |
6bz1_A | 2e-21 | 11 | 84 | 1 | 73 | MEF2 CHIMERA |
6bz1_B | 2e-21 | 11 | 84 | 1 | 73 | MEF2 CHIMERA |
6bz1_C | 2e-21 | 11 | 84 | 1 | 73 | MEF2 CHIMERA |
6bz1_D | 2e-21 | 11 | 84 | 1 | 73 | MEF2 CHIMERA |
6c9l_A | 2e-21 | 11 | 84 | 1 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_B | 2e-21 | 11 | 84 | 1 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_C | 2e-21 | 11 | 84 | 1 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_D | 2e-21 | 11 | 84 | 1 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_E | 2e-21 | 11 | 84 | 1 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_F | 2e-21 | 11 | 84 | 1 | 73 | Myocyte-specific enhancer factor 2B |
Search in ModeBase |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | JN974186 | 0.0 | JN974186.1 Pisum sativum MADS-box protein (FULb) mRNA, complete cds. |