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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Tp57577_TGAC_v2_mRNA2009 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family |
ARF |
Protein Properties |
Length: 631aa MW: 70024 Da PI: 7.6208 |
Description |
ARF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Tp57577_TGAC_v2_mRNA2009 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | B3 | 73 | 3.6e-23 | 118 | 219 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT- CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegD 78
f k+lt+sd+++ g +++p+ +ae++ +++ + t++ +d +g+ W++++iyr++++r++lt+GW++Fv+ ++L +gD
Tp57577_TGAC_v2_mRNA2009 118 FAKTLTQSDANNGGGFSVPRYCAETIfprldysAEPPVQ--TIIAKDMHGQCWKFRHIYRGTPRRHLLTTGWSNFVNHKKLVAGD 200
89****************************986445444..8******************************************* PP
EEEEEE-SSSEE..EEEEE-S CS
B3 79 fvvFkldgrsefelvvkvfrk 99
++vF + +++ l+v+++r+
Tp57577_TGAC_v2_mRNA2009 201 SIVFL--RAENGDLCVGIRRA 219
*****..4488999****997 PP
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2 | Auxin_resp | 112.2 | 5.1e-37 | 283 | 366 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83
a++ a ++ FevvY+Prast+eF+vkv++v++a++++++ GmRfkm fetedss++++ +Gt+++v+ dp++Wp+S+Wr+L+
Tp57577_TGAC_v2_mRNA2009 283 AVNCAINGRSFEVVYYPRASTPEFCVKVSSVKSAMQIQWCSGMRFKMPFETEDSSRISWfMGTISSVHVQDPIHWPDSPWRLLQ 366
567888999*************************************************************************97 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 631 aa
Download sequence Send
to blast |
MFVVMDSMEK TTEKCLDSQL WHACAGAMVQ MPPLNTKVFY FPQGHAEHAH GKVDFNKTRV 60 PPLIPCRISA MKYMADPETD EVYVKMRLTP LRENELDLEE DCFFGNNGLE GQEKPTSFAK 120 TLTQSDANNG GGFSVPRYCA ETIFPRLDYS AEPPVQTIIA KDMHGQCWKF RHIYRGTPRR 180 HLLTTGWSNF VNHKKLVAGD SIVFLRAENG DLCVGIRRAK KGGIGGGITD QFSNSSSNWN 240 RVSPLFGGGS GFLCGNENRK SCGGVGGDDD LMRRVGSESV VEAVNCAING RSFEVVYYPR 300 ASTPEFCVKV SSVKSAMQIQ WCSGMRFKMP FETEDSSRIS WFMGTISSVH VQDPIHWPDS 360 PWRLLQVVWD EPDLLQNVKC VNPWLVELVS NMPNFNLSPF TPPRKKPRFI QDPYFHLINQ 420 LPMPTSSSSS LTSFSNINLL NYTNSSLCNI QDNSPNYSSS SSIQGARHAQ FGSNNNFPSD 480 LIPFNKLQQD MFLGNLSMSR FDKKQPIRPT CGPNNNNKNN VDLSCLLSVG NSGQSFKELS 540 NIEAKAPHKH QILLFGKLIH TEQQNNSSNV SKSGSLSEGI TSLKTSNVSS SSDPVENSSD 600 GGSPPWYKDQ QQHKTDLVGT ENVTTLCMAS *
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Functional Description ? help
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Source |
Description |
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC148757 | 0.0 | AC148757.4 Medicago truncatula clone mth2-57e16, complete sequence. |