PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA19991

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

MYB

Protein Properties

Length: 321aa MW: 36199.9 Da PI: 7.8825

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA19991	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.6	2.1e-16	44	91	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEde l +++k+ G g+W+t +++ g+ R++k+c++rw +yl Tp57577_TGAC_v2_mRNA19991 44 RGPWTSEEDEVLSEYIKKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYL 91 89****************************99**********97 PP
2	Myb_DNA-binding	47	6e-15	102	142	6	48
HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l Tp57577_TGAC_v2_mRNA19991 102 PDEEDLILRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWNTHL 142 89*************.*****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	9.8E-22	35	93	IPR009057	Homeodomain-like
PROSITE profile	PS51294	16.376	39	91	IPR017930	Myb domain
SuperFamily	SSF46689	1.58E-28	41	138	IPR009057	Homeodomain-like
SMART	SM00717	5.2E-12	43	93	IPR001005	SANT/Myb domain
Pfam	PF00249	7.7E-14	44	91	IPR001005	SANT/Myb domain
CDD	cd00167	8.62E-10	46	91	No hit	No description
PROSITE profile	PS51294	24.397	92	146	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.4E-24	94	147	IPR009057	Homeodomain-like
SMART	SM00717	2.7E-13	96	144	IPR001005	SANT/Myb domain
Pfam	PF00249	9.9E-14	102	142	IPR001005	SANT/Myb domain
CDD	cd00167	3.60E-11	102	142	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010090	Biological Process	trichome morphogenesis
GO:0010468	Biological Process	regulation of gene expression
GO:0048354	Biological Process	mucilage biosynthetic process involved in seed coat development
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 321 aa Download sequence Send to blast
MRNPNSSSSS TNSNKKKHKI NNNGSSNSTS TTTTPCCSKI GLKRGPWTSE EDEVLSEYIK 60 KEGEGRWRTL PKRAGLLRCG KSCRLRWMNY LRPSVKRGQI APDEEDLILR LHRLLGNRWS 120 LIAGRIPGRT DNEIKNYWNT HLSKKLINQG IDPRTHKPLN NINPSTSSII PNINHQITNH 180 FTSSPTPHHH PMIYNESNHP SHDHNHYYPQ QQQQEAKEVN DDDANYDYLI NDVSAMDKAA 240 NNNRGDCNKS STDYCCDDGF TSFLDSLIND DAFAAHRSEN DPADPLISSA EPSAFWESPL 300 MSTNFTQNKD STKTGKLHDA *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	2e-25	42	146	5	108	B-MYB
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269\|PubMed:15361138}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA19991

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC146760	8e-84	AC146760.13 Medicago truncatula clone mth2-174d3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003601609.3	1e-123	transcription repressor MYB5
Swissprot	Q38850	8e-84	MYB5_ARATH; Transcription repressor MYB5
TrEMBL	A0A2K3NMI6	0.0	A0A2K3NMI6_TRIPR; Transcription repressor MYB 5-like protein
STRING	AES71860	1e-122	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3894	30	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13540.1	2e-79	myb domain protein 5

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA19991

Publications ? help Back to Top
Ranocha P,Francoz E,Burlat V,Dunand C Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion. Plant Signal Behav, 2014. 9(11): p. e977734 [PMID:25531128]