PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA19948
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C2H2
Protein Properties Length: 493aa    MW: 54282.5 Da    PI: 8.2748
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA19948genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.10.000147292323
                               ETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                               C++C+k F r  nL+ H r H
  Tp57577_TGAC_v2_mRNA19948 72 CEICNKGFQRDQNLQLHRRGH 92
                               *******************88 PP
2zf-C2H212.80.00036146168123
                                EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                +kC++C+k +  +s+ k H +t+
  Tp57577_TGAC_v2_mRNA19948 146 WKCEKCSKKYAVQSDWKAHSKTC 168
                                58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.6E-56992IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.29E-66992No hitNo description
SMARTSM003550.117092IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.8247092IPR007087Zinc finger, C2H2
PROSITE patternPS0002807292IPR007087Zinc finger, C2H2
SMARTSM00355230111141IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.5E-4134167IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.29E-6141166No hitNo description
SMARTSM00355140146166IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MQQQVIEENM SNLTSASGEA SEIGTSYSQE QYLAPPTQTV KKKRNLPGNP DPEAEVIALS  60
PKSLLAKNRF LCEICNKGFQ RDQNLQLHRR GHNLPWKLKQ RSSKEIRKKV YVCPETTCVH  120
HDPSRALGDL TGIKKHFCRK HGEKKWKCEK CSKKYAVQSD WKAHSKTCGT REYRCDCGTL  180
FSRRDSFITH RAFCDALAEE SARAMINMTV PILPSQQQPS SSPSSNHMIN LQTQFNNPQS  240
QELNHVFQLK KEQQQQNQSQ SFNLSEIPPW LGPPNNVDTI SSTSSIFSQN NHFSSHNQEN  300
PNPNLVHVSG PTLPPYQTVP SPHMSATALL QKAAQMGATM NRNGSASSPA MNIMTHQLDS  360
DSLNNVSGHF GLNLLPSSSS HEHQQNRTSN TTTTTTTPTT CFNIHDVMFS SSSSPSGFEQ  420
AHFDEMFSGI MNSKKDGKTV ADDGGGGGGG GGNEGLTRDF LGLRPLSHSD ILSIAGIGNC  480
MNDESQKPSW QG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C6e-35142203364Zinc finger protein JACKDAW
5b3h_F6e-35142203364Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
196108KLKQRSSKEIRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA19948
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003627109.10.0protein indeterminate-domain 7
SwissprotQ9LRW71e-138IDD11_ARATH; Protein indeterminate-domain 11
TrEMBLG7LHG90.0G7LHG9_MEDTR; C2H2-like zinc finger protein, putative
STRINGAET015850.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55110.11e-112indeterminate(ID)-domain 7
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]