PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA19805
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family bHLH
Protein Properties Length: 291aa    MW: 32800 Da    PI: 6.853
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA19805genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.35.6e-08133177554
                                HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                        HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                + ++Er+RR ++ + f eL   +P +     kK +Ka+i+  A++++ +L
  Tp57577_TGAC_v2_mRNA19805 133 KIMVERKRRLELAHMFIELSATIPRL-----KKTDKASIVMGAINHVEQL 177
                                6799**********************.....9***************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.56128177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.38E-6131182No hitNo description
PfamPF000109.6E-6132177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.19E-12132198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-10133189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-7134183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MEQSWEDIWH LHTEMDIENW LEMCQEEDYL GDYMVHQLSL EAPAMAGAAT ENTLQEICHI  60
PTVVSSEMTK QLPHPSTSSK TCTVSFDNSA DIPLKPSVIS SKPPRPPCSA KKRTSEKLKS  120
TEAKAITKEG EKKIMVERKR RLELAHMFIE LSATIPRLKK TDKASIVMGA INHVEQLKKR  180
VKELEQQNNI GKEPIRLHNE LLPYVKAKVL DKNILIYINC EKQNGIELNI LEMLENLHLF  240
VTSTSVLPFG SSTLAITIIA KMDDAYKMKM VDLVDNIRQL LSNGSANHPT *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1136141ERKRRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA19805
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024631425.19e-86transcription factor bHLH19 isoform X1
TrEMBLA0A2Z6MVU51e-151A0A2Z6MVU5_TRISU; Uncharacterized protein
STRINGAES682184e-81(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1897525
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22770.11e-23bHLH family protein