PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA19693 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | MYB_related | ||||||||
Protein Properties | Length: 75aa MW: 8353.07 Da PI: 4.1819 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 32 | 2.9e-10 | 25 | 68 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 ++ ++++E+ l+ + ++ G + W++Ia +++ gRt++++ +w++ Tp57577_TGAC_v2_mRNA19693 25 KLEFSADEEILITMVYNLVGEK-WSLIAGRIP-GRTAEEIEKYWNS 68 6789****************99.*********.***********85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.702 | 20 | 70 | IPR017877 | Myb-like domain |
SMART | SM00717 | 6.7E-7 | 24 | 72 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.5E-9 | 26 | 68 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.72E-8 | 27 | 70 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.31E-6 | 27 | 67 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-12 | 28 | 69 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 75 aa Download sequence Send to blast |
MADTESSSNN VSADSRDQKS SQDSKLEFSA DEEILITMVY NLVGEKWSLI AGRIPGRTAE 60 EIEKYWNSRY STSE* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA19693 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP238113 | 6e-44 | KP238113.1 Lablab purpureus caprice and triptychon-like enhancer transcript variant X2 (etcl2) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013455622.1 | 1e-36 | transcription factor CPC | ||||
TrEMBL | A0A2Z6NWZ7 | 1e-42 | A0A2Z6NWZ7_TRISU; Uncharacterized protein | ||||
STRING | XP_004515082.1 | 1e-35 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2692 | 31 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01380.1 | 6e-16 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA19693 |