PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA19634

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

MYB_related

Protein Properties

Length: 219aa MW: 23959.6 Da PI: 6.6288

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA19634	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	41.5	3.1e-13	75	120	2	47
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 g+WT++E++ ++++ k ++g Wk I+ + k+Rt+ q+ s+ qk+ Tp57577_TGAC_v2_mRNA19634 75 GNWTEQEHKMFLKGLKHVPKGKWKQISTDFVKTRTPTQVASHAQKH 120 89******************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.786	69	125	IPR017930	Myb domain
SMART	SM00717	3.2E-8	73	123	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	2.47E-14	73	125	IPR009057	Homeodomain-like
Pfam	PF00249	2.3E-10	75	120	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.1E-9	75	120	IPR009057	Homeodomain-like
CDD	cd00167	3.69E-8	76	121	No hit	No description
TIGRFAMs	TIGR01557	1.0E-12	76	122	IPR006447	Myb domain, plants

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence Send to blast
MSTSNDGGEN SIMIFGVKVS RGINNNNTNT TTNNNLAQYQ QPPPQVSSST DASNVSDNVA 60 DASVGSHECK RVNEGNWTEQ EHKMFLKGLK HVPKGKWKQI STDFVKTRTP TQVASHAQKH 120 FLLQANQNRR RRGKFSVFDL TIDEEVGSST TMEDKQIQQE IVVPLPPPTP TAIPSTHNGS 180 ISDHSLSTGL CPVALPMLPP WIDLNDNESS YAENFSLS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA19634

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004489945.1	8e-56	transcription factor MYB1R1-like
Refseq	XP_012568256.1	8e-56	transcription factor MYB1R1-like
TrEMBL	A0A1S3DZI1	2e-54	A0A1S3DZI1_CICAR; transcription factor MYB1R1-like
STRING	XP_004489945.1	3e-55	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5338	33	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G70000.2	9e-29	MYB_related family protein

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA19634