PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA19555
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C2H2
Protein Properties Length: 231aa    MW: 26301.9 Da    PI: 9.3637
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA19555genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.13.9e-0785104120
                                EEETTTTEEESSHHHHHHHH CS
                    zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                                ++Cp+C+k+F+r  nL+ H+
  Tp57577_TGAC_v2_mRNA19555  85 FSCPICHKTFNRYNNLQMHM 104
                                89*****************9 PP
2zf-C2H212.10.00058169191123
                                EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                ++C +Cgk+   k + ++H +++
  Tp57577_TGAC_v2_mRNA19555 169 FTCRKCGKPLAVKGDWRTHEKNC 191
                                89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.77E-679107No hitNo description
PROSITE profilePS5015710.49285112IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.0E-685104IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.03685107IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028087107IPR007087Zinc finger, C2H2
SMARTSM00355130132164IPR015880Zinc finger, C2H2-like
SMARTSM00355160169189IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009813Biological Processflavonoid biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MDLQPLPLLS SFLGSTSQQP LQQNENQKSC YNQAEDDVTV ALHIGLPDNS IESPIENGFV  60
NVPNHVPNNY WIPTQEQILI GFSHFSCPIC HKTFNRYNNL QMHMWGHGSQ YRKGPDSLRR  120
THPRPLLDLP CYCCSKGCKN NIEHPRAKPL KDFRTLQTHY KRKHGSKTFT CRKCGKPLAV  180
KGDWRTHEKN CGKRWLCICG SDFKHKRSLK DHIKAFGFGH SPFSSSSDGI *
Functional Description ? help Back to Top
Source Description
UniProtMay act as a transcriptional regulator involved in the differentiation of young endothelium. Altered differentiation results in incompetence for pigments synthesis and the lack of condensed tannins in the seed coat (PubMed:21477081). Plays a role in the regulatory network controlling flavonoid accumulation in endothelium cells during seed development (PubMed:21477081). {ECO:0000269|PubMed:11782451, ECO:0000269|PubMed:21477081}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA19555
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP7001601e-139FP700160.1 Medicago truncatula chromosome 5 clone mtf83-100f22, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012567653.11e-160protein TRANSPARENT TESTA 1
SwissprotQ8VWG31e-94TT1_ARATH; Protein TRANSPARENT TESTA 1
TrEMBLA0A1S3DWQ91e-159A0A1S3DWQ9_CICAR; protein TRANSPARENT TESTA 1
STRINGXP_004516564.11e-160(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34790.12e-92C2H2 family protein
Publications ? help Back to Top
  1. Lian J, et al.
    Silencing of BnTT1 family genes affects seed flavonoid biosynthesis and alters seed fatty acid composition in Brassica napus.
    Plant Sci., 2017. 254: p. 32-47
    [PMID:27964783]