PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA19330
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C2H2
Protein Properties Length: 304aa    MW: 34434.3 Da    PI: 8.0155
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA19330genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.32.7e-05119138120
                                EEETTTTEEESSHHHHHHHH CS
                    zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                                ++C+ C+k+F+r  n++ H+
  Tp57577_TGAC_v2_mRNA19330 119 FSCSVCNKTFNRFNNMQMHM 138
                                89*****************9 PP
2zf-C2H213.30.00025207229123
                                EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                ++C +C k+F  + + ++H +++
  Tp57577_TGAC_v2_mRNA19330 207 FECRKCRKPFAVRGDWRTHEKNC 229
                                89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.87E-5107140No hitNo description
PROSITE profilePS5015710.263119146IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.7E-6119138IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.13119141IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280121141IPR007087Zinc finger, C2H2
SMARTSM00355220170202IPR015880Zinc finger, C2H2-like
SMARTSM00355110207227IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MQTHHHQYYS LSCVSTSESI SCSSLEDEDS IFLSLAPPGH QQIPPAPPKL SSSTTTIPPP  60
LQQNTISPLH DXXXXXXXXX XXXXHISLNP TSTFEPPHNP IPQYWIPSPS QILIGPTQFS  120
CSVCNKTFNR FNNMQMHMWG HGSQYRKGPE SLKGSKPTSS SSSMLKLPCY CCAEGCKNNI  180
NYPRSRPLKD FRTLQTHFKR KHGGKTFECR KCRKPFAVRG DWRTHEKNCG KLWFCICGSD  240
FKHKRSLKDH VRAFGNGHAP HTLESLSFDH EYKANENFKE EEASGSEDQD EEDNNSEVAF  300
TFN*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator (Probable). Involved in leaf vasculature patterning (PubMed:18643975). {ECO:0000269|PubMed:18643975, ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA19330
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013469412.11e-140zinc finger protein WIP6
SwissprotQ9FX681e-105ZWIP6_ARATH; Zinc finger protein WIP6
TrEMBLA0A2K3L7W80.0A0A2K3L7W8_TRIPR; Protein TRANPARENT TESTA 1-like
STRINGXP_004496311.11e-125(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13290.11e-93C2H2-like zinc finger protein