![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Tp57577_TGAC_v2_mRNA1931 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 233aa MW: 26577.2 Da PI: 5.7624 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 46.6 | 6.1e-15 | 79 | 165 | 1 | 95 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 f+k + +s+v + +l lp +f+ eh k+ +tlede+ +++v + +++g+ l++GW+ F+ +n+L++ D+++F+l+ Tp57577_TGAC_v2_mRNA1931 79 FIKSMNRSHVYSCFWLGLPSRFCVEHFPKT--VYNMTLEDENASEYDVVY--IGSRGG--LSGGWRAFALENKLDDCDTLIFELI 157 899999********************7554..457***************..777777..9***********************9 PP SSSEE..EEE CS B3 86 grsefelvvk 95 + ++f ++ Tp57577_TGAC_v2_mRNA1931 158 EPTRF--KIY 165 87777..444 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.82E-20 | 72 | 168 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 4.4E-18 | 72 | 168 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.95E-22 | 77 | 168 | No hit | No description |
Pfam | PF02362 | 3.6E-13 | 79 | 165 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.701 | 79 | 170 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.0E-17 | 79 | 170 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 233 aa Download sequence Send to blast |
MHLCTSKQLC DQSFSQDYVL FLKNLGADFF EVFVRLKLIL SASARPLDEI KEAIEQEKNC 60 AYEVAEAIQI NLQSSKPSFI KSMNRSHVYS CFWLGLPSRF CVEHFPKTVY NMTLEDENAS 120 EYDVVYIGSR GGLSGGWRAF ALENKLDDCD TLIFELIEPT RFKIYIVKAF PNIDEQEEEE 180 ENNTLVQEIM HTSKVTKVSK TSSNRGSKSK KTKMQKYVTE TKSSGVNPNK FE* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA1931 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004490734.1 | 2e-80 | ankyrin repeat domain-containing protein 12-like | ||||
Refseq | XP_004490735.1 | 2e-80 | ankyrin repeat domain-containing protein 12-like | ||||
Swissprot | Q5KQI4 | 6e-46 | Y5814_ORYSJ; B3 domain-containing protein Os05g0481400 | ||||
TrEMBL | A0A1S2XMV7 | 5e-79 | A0A1S2XMV7_CICAR; ankyrin repeat domain-containing protein 12-like | ||||
TrEMBL | A0A2Z6MC87 | 2e-81 | A0A2Z6MC87_TRISU; Uncharacterized protein | ||||
STRING | XP_004490734.1 | 8e-80 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12433 | 23 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G58280.1 | 7e-47 | B3 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Tp57577_TGAC_v2_mRNA1931 |
Publications ? help Back to Top | |||
---|---|---|---|
|