PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA19272

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

Nin-like

Protein Properties

Length: 949aa MW: 103581 Da PI: 6.5227

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA19272	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	90.1	1.8e-28	620	671	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+isl +l++yF++++kdAAk++gvc+T+LKriCRq+GI RWP+Rkik++ Tp57577_TGAC_v2_mRNA19272 620 AEKTISLPVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKV 671 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.37	610	691	IPR003035	RWP-RK domain
Pfam	PF02042	4.6E-24	624	671	IPR003035	RWP-RK domain
SuperFamily	SSF54277	8.5E-24	835	931	No hit	No description
Gene3D	G3DSA:3.10.20.240	3.4E-24	845	926	No hit	No description
PROSITE profile	PS51745	21.745	846	929	IPR000270	PB1 domain
SMART	SM00666	6.5E-26	846	929	IPR000270	PB1 domain
CDD	cd06407	1.85E-38	847	928	No hit	No description
Pfam	PF00564	5.3E-14	847	928	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 949 aa Download sequence Send to blast
MEYGGGLVGD GGVFGNMVGG GGEAADMIEE LLVDGCWIEA SENNMMAMQS QTQTHYMSTN 60 NNNNNNIPIG MGEGDHFNNH HHNQIECNVP TDHDDDQESG FVVGKRWWIG PRANPGPSTS 120 VKERLVVAVG YLKEYTKNSS NNVLIQIWVP ALRRRSPLLI HNHYLHESSS SAPVSVNPNT 180 NVHVRFFRSH EYPRHQQQQY GSLFALPVFE RGSGTCLGVI EFVITNQTVV NYRPQLDHLS 240 NALEAVDFRS SHNMNIPSAV KVFEELYEAA VNEIVEVLAS VCKTHNLPLA LTWAPCIQQQ 300 GGGVRGKGTA GAAGCGVSVA VPTDQMNNNQ MMMNCVSTVD SACYVGDMEV LGFQEVCSEY 360 HLFNGQGIVG TAFTTTKPCF AIDITAFSKA EYPLAHHANM FGLHAAVAIP LRSVYTGSAA 420 DFVLEFFLPK DCRDPEQQKH MLNSLSLVVQ QACRSLHLHV VIDDTDNANH HDHDQDQFTF 480 PTTTTTNNYM PSSASDAATA SLSQVDATSG CSTKDTSSSC SWIAHMMEAQ HKGKGVSVSL 540 EYLQEPKEEF KVTTCNWDRE REGNSVFSEF GQVLQHDQSS NSRASVEAGE ESGGCGVGGG 600 RRSSSSSSGR KSGDKRRTKA EKTISLPVLR QYFAGSLKDA AKSIGVCPTT LKRICRQHGI 660 TRWPSRKIKK VGHSLKKLQL VIDSVQGAEG AIQIGSFYAS FPELSTATAN GGGGGGGDHN 720 NVNNSFYNSH GDGVVNGLKS PPSACSQTHA AGNKLITANI INGDHHHHHH VMMTENPAAP 780 LAADSLMMHG SNINIQNYQQ LQEDQDTKQL LLHFNNNNQT LPPRPTAGAW NNNNNSSSSG 840 LLERGAFRVK ATFADEKIRF SLQAMWGFRD LQLEIARRFN LNDMNNLVLK YLDDEGEWVV 900 LSCDADLEEC KDLHTSSHTR TIRLSLFQAS PLNIPNNFVR NSSSSPSS*

Sequence ? help Back to Top

Protein Sequence Length: 949 aa Download sequence Send to blast

MEYGGGLVGD GGVFGNMVGG GGEAADMIEE LLVDGCWIEA SENNMMAMQS QTQTHYMSTN  60
NNNNNNIPIG MGEGDHFNNH HHNQIECNVP TDHDDDQESG FVVGKRWWIG PRANPGPSTS  120
VKERLVVAVG YLKEYTKNSS NNVLIQIWVP ALRRRSPLLI HNHYLHESSS SAPVSVNPNT  180
NVHVRFFRSH EYPRHQQQQY GSLFALPVFE RGSGTCLGVI EFVITNQTVV NYRPQLDHLS  240
NALEAVDFRS SHNMNIPSAV KVFEELYEAA VNEIVEVLAS VCKTHNLPLA LTWAPCIQQQ  300
GGGVRGKGTA GAAGCGVSVA VPTDQMNNNQ MMMNCVSTVD SACYVGDMEV LGFQEVCSEY  360
HLFNGQGIVG TAFTTTKPCF AIDITAFSKA EYPLAHHANM FGLHAAVAIP LRSVYTGSAA  420
DFVLEFFLPK DCRDPEQQKH MLNSLSLVVQ QACRSLHLHV VIDDTDNANH HDHDQDQFTF  480
PTTTTTNNYM PSSASDAATA SLSQVDATSG CSTKDTSSSC SWIAHMMEAQ HKGKGVSVSL  540
EYLQEPKEEF KVTTCNWDRE REGNSVFSEF GQVLQHDQSS NSRASVEAGE ESGGCGVGGG  600
RRSSSSSSGR KSGDKRRTKA EKTISLPVLR QYFAGSLKDA AKSIGVCPTT LKRICRQHGI  660
TRWPSRKIKK VGHSLKKLQL VIDSVQGAEG AIQIGSFYAS FPELSTATAN GGGGGGGDHN  720
NVNNSFYNSH GDGVVNGLKS PPSACSQTHA AGNKLITANI INGDHHHHHH VMMTENPAAP  780
LAADSLMMHG SNINIQNYQQ LQEDQDTKQL LLHFNNNNQT LPPRPTAGAW NNNNNSSSSG  840
LLERGAFRVK ATFADEKIRF SLQAMWGFRD LQLEIARRFN LNDMNNLVLK YLDDEGEWVV  900
LSCDADLEEC KDLHTSSHTR TIRLSLFQAS PLNIPNNFVR NSSSSPSS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA19272

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003618108.1	0.0	protein NLP5
TrEMBL	A0A2K3MS25	0.0	A0A2K3MS25_TRIPR; Protein NLP2-like
STRING	AET01067	0.0	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1237	33	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35270.1	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA19272