PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA1915

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

M-type_MADS

Protein Properties

Length: 294aa MW: 34154.7 Da PI: 4.7283

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA1915	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	22.6	1.3e-07	11	54	1	44
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 k i+n+ r+ +f++Rr+g+ KK + S +ev++i+ +g Tp57577_TGAC_v2_mRNA1915 11 KHIQNEKVRKSSFIQRRKGLTKKVSKFSKNFSVEVCLIVCDGDG 54 689***********************************987666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	0.0029	1	62	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	12.503	3	63	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	5.49E-13	5	78	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.4E-8	13	54	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence Send to blast
MGRGGGKVTL KHIQNEKVRK SSFIQRRKGL TKKVSKFSKN FSVEVCLIVC DGDGDSKPMT 60 WPQDFSTLQS MLTKYEQQKI EMTPKKFDMQ DYFANKKNMV EAEILNVRKK ILMNKYPTWG 120 RPFNKLEMEQ LRSFVDIVDL KIQACNQRIN MLKNMQQSDQ TNFMQNVGSE NVASPLSSQP 180 DDLINPLIDI SEMIDFSDLM EWDEIMAQEN DLSSHSSQMQ HEFGKLDDQV DKSDQEWATQ 240 LEDFDDWAVN KLNNGDGWVK QPYMFECQDF CFLSEIEQQC ATLDAFYQPR YGF*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA1915

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003595578.1	5e-67	MADS-box transcription factor 5
TrEMBL	A0A2Z6MUL0	1e-105	A0A2Z6MUL0_TRISU; Uncharacterized protein
STRING	AES65829	2e-66	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF534	31	111

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G55690.1	3e-10	M-type_MADS family protein

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA1915