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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Tp57577_TGAC_v2_mRNA18951 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family |
bZIP |
Protein Properties |
Length: 366aa MW: 39970.1 Da PI: 6.7291 |
Description |
bZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Tp57577_TGAC_v2_mRNA18951 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | bZIP_1 | 32.2 | 2.3e-10 | 167 | 219 | 5 | 57 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57
kr++r NR +A rs +RK +i eLe+kv++L++e ++L +l ++
Tp57577_TGAC_v2_mRNA18951 167 KRAKRILANRQSAARSKERKARYIHELERKVQTLQTEATTLSAQLTLYQRDTT 219
9*****************************************99988876655 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 366 aa
Download sequence Send
to blast |
MQHQSSNPNP NSNPNPHNAN TASQLPPPVP PPSTTATTSA GKSSLFAHSS GNASSHHRRA 60 HSEVNFRLPD DMMDLSPSDP FTGGSSTASL DEIGSEDDLF STYIDMDKLG DAGADLVGND 120 VPEKNPVRPR HRHSSSVDGS SSFGEIMDGK KAMPPDKLAE LWSIDPKRAK RILANRQSAA 180 RSKERKARYI HELERKVQTL QTEATTLSAQ LTLYQRDTTG LSTENTELKL RLQAMEQQAH 240 LRDALNDALK KEVERLKVAT GDIMSHTQSF NLGMHQMQFT ESNYAPIPPQ PGPSNHRNTQ 300 LPLFGHSPSS MQSHQLHQTN SLSFSELLQN DQIGRFQGLD ISSKGTTVVK SEDPSLSASE 360 SSTTY*
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Functional Description ? help
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Source |
Description |
UniProt | Transcrition factor that may participate with bZIP34 in the gametophytic control of pollen development. {ECO:0000269|PubMed:27896439}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AY822466 | 0.0 | AY822466.1 Pisum sativum AT-rich element binding factor 1 (ATF1) mRNA, complete cds. |
Publications
? help Back to Top |
- Duarte JM, et al.
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] - Pawar V, et al.
A novel family of plant nuclear envelope-associated proteins. J. Exp. Bot., 2016. 67(19): p. 5699-5710 [PMID:27630107] - Gibalová A, et al.
Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte. Plant Reprod, 2017. 30(1): p. 1-17 [PMID:27896439] - Ezer D, et al.
The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] - Babiychuk E,Fuangthong M,Van Montagu M,Inzé D,Kushnir S
Efficient gene tagging in Arabidopsis thaliana using a gene trap approach. Proc. Natl. Acad. Sci. U.S.A., 1997. 94(23): p. 12722-7 [PMID:9356517]
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