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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Tp57577_TGAC_v2_mRNA18922 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family |
ARF |
Protein Properties |
Length: 613aa MW: 68683.2 Da PI: 9.529 |
Description |
ARF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Tp57577_TGAC_v2_mRNA18922 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | B3 | 67 | 2.8e-21 | 139 | 240 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT- CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegD 78
f k+lt+sd+++ g ++ p+++ae+ +g++++ +++ +d +g+ W +k+ yr++++r++lt+GW+ Fv+++++ +gD
Tp57577_TGAC_v2_mRNA18922 139 FAKTLTQSDSNNGGGFSCPRHCAETLfpsldySGNPPS-QDIYPKDVHGEIWPFKHVYRGTPKRHLLTTGWSPFVSDKKIVSGD 221
89*********************999*****9656554.59******************************************* PP
EEEEEE-SSSEE..EEEEE-S CS
B3 79 fvvFkldgrsefelvvkvfrk 99
++vF +++++ l+v+++r+
Tp57577_TGAC_v2_mRNA18922 222 SIVFV--RTENGDLHVGLRRA 240
*****..4588999****996 PP
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2 | Auxin_resp | 93.7 | 2.9e-31 | 312 | 393 | 2 | 83 |
Auxin_resp 2 ahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83
+++ +++++F+vvY+Pra+t+eF vk++ + kal+++++ GmRfkma+eteds ++++ Gtvv+v+++dp Wp+S Wr L+
Tp57577_TGAC_v2_mRNA18922 312 VKRGTNMEPFDVVYYPRAGTPEFFVKISLIGKALQIRWCHGMRFKMAIETEDSTRISWfVGTVVSVQASDP-AWPESFWRFLQ 393
66778999***************************************************************.********997 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 613 aa
Download sequence Send
to blast |
MKAKRKGGNL GLNEMNKESK TKMRDLNRGV DPQLWHAIAG GMVQMPEVNS KIFYFPQGHA 60 EHACELVNFS AHSIIPHKIP SLIPCRVESI KYMADPETDE VFTKLRLVPL HISQVRFDDD 120 DGGVGGIGVS ETKDKHQCFA KTLTQSDSNN GGGFSCPRHC AETLFPSLDY SGNPPSQDIY 180 PKDVHGEIWP FKHVYRGTPK RHLLTTGWSP FVSDKKIVSG DSIVFVRTEN GDLHVGLRRA 240 KRKRDVRPDP SSEMKPGSGI GIRPDLPYGV FTSYSGEENN KLRRNGKGNG LRISDGMMGR 300 GKVKAQEVIE AVKRGTNMEP FDVVYYPRAG TPEFFVKISL IGKALQIRWC HGMRFKMAIE 360 TEDSTRISWF VGTVVSVQAS DPAWPESFWR FLQVEWDEPE LLKNLKRVNP WQVEIVSNMP 420 SIPLSPYVPP RKKLRLPQHP NYPLDGQFSM PTFPNNFLSP NIPIFHLPGT TPVGMQGARH 480 PHFSFSSSDF HLNKFPLGLF KPSFQQPFNH TATTSMTVPY NNTMLQKPTT SENASCPLTS 540 TQSSEKSDHV KPSHLMLFGQ KITIENKISS NTTADAGNES IEKKMTNNFS DLHLQGLPKC 600 SSGERFELNH KN*
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Nucleic Localization
Signal ? help
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No. |
Start |
End |
Sequence |
1 | 237 | 244 | RRAKRKRD |