PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA18756

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

FAR1

Protein Properties

Length: 500aa MW: 57007.7 Da PI: 8.8349

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA18756	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	78.8	9.8e-25	70	160	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtklel 83 +fYn+Y+k++GF +r+++ +ks+ +g t+r+f+C keg r+ +k+ +++ ++raetrtgC+a++ +++++ gk++v ++ Tp57577_TGAC_v2_mRNA18756 70 DFYNAYSKTIGFGIRREYGNKSRVDGVLTSRRFTCFKEGIRSVDKRC-HSTAEPRAETRTGCQARMAISLDRkIGKYKVVDFIA 152 6****************************************9998.99****************9989****** PP FAR1 84 eHnHelap 91 +HnH+l+p Tp57577_TGAC_v2_mRNA18756 153 KHNHPLQP 160 ***986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.0E-20	70	160	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	9.8E-30	280	374	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 500 aa Download sequence Send to blast
MSNYAVATTV VTSQHNVSTT VNGQENMNSS LPNCVDSLVN NIQEQNVQQS IANSEPHLEM 60 EFESEASTYD FYNAYSKTIG FGIRREYGNK SRVDGVLTSR RFTCFKEGIR SVDKRCHSTA 120 EPRAETRTGC QARMAISLDR KIGKYKVVDF IAKHNHPLQP PEHVHMIRSH RRISEAQASQ 180 IVLGDESGLT PKDLHEYISK QAGGIETVGF TREDLKNYLK TKRKQSLKYG EVGALMMYFK 240 QESENPSFFY DFQMDVDELI TNIFWADAQM INDYGYFGDV ITFDTTYKTN KDCRPLGVFV 300 GLNNHRQTVI FGAALLYDET IPSFQWLFET FLKAMGGAKP KTMLTDQDPA MARALSIVMP 360 ETFHGLCTWH IRQNSLRHVN HLYQQSSRFR GDFVILCSNK LQFRGHNQAK LTMKLNIKLQ 420 FKGHNQAKLT MELNIKLQFK GHNQAKFCNK AFLTSILKAE PSLSTVTSSK MRRERFNFKD 480 LTQSDDDGCY LYDGHGLVL*

Sequence ? help Back to Top

Protein Sequence Length: 500 aa Download sequence Send to blast

MSNYAVATTV VTSQHNVSTT VNGQENMNSS LPNCVDSLVN NIQEQNVQQS IANSEPHLEM  60
EFESEASTYD FYNAYSKTIG FGIRREYGNK SRVDGVLTSR RFTCFKEGIR SVDKRCHSTA  120
EPRAETRTGC QARMAISLDR KIGKYKVVDF IAKHNHPLQP PEHVHMIRSH RRISEAQASQ  180
IVLGDESGLT PKDLHEYISK QAGGIETVGF TREDLKNYLK TKRKQSLKYG EVGALMMYFK  240
QESENPSFFY DFQMDVDELI TNIFWADAQM INDYGYFGDV ITFDTTYKTN KDCRPLGVFV  300
GLNNHRQTVI FGAALLYDET IPSFQWLFET FLKAMGGAKP KTMLTDQDPA MARALSIVMP  360
ETFHGLCTWH IRQNSLRHVN HLYQQSSRFR GDFVILCSNK LQFRGHNQAK LTMKLNIKLQ  420
FKGHNQAKLT MELNIKLQFK GHNQAKFCNK AFLTSILKAE PSLSTVTSSK MRRERFNFKD  480
LTQSDDDGCY LYDGHGLVL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA18756

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024630916.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A2K3LW05	0.0	A0A2K3LW05_TRIPR; Protein FAR1-related sequence 5-like (Fragment)
STRING	XP_004503202.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3045	14	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	4e-83	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA18756