PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA18620
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family LBD
Protein Properties Length: 219aa    MW: 23998 Da    PI: 8.1361
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA18620genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260143.85e-4531129199
                     DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklq 84 
                                +CaaCk+lrrkC ++C++apyfp e+p+kfanvhk+FGasnv+k+l++l +++reda++sl+yeAear+rdPvyG+vg i+ lq
  Tp57577_TGAC_v2_mRNA18620  31 PCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKILNELLPHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQ 114
                                7*********************************************************************************** PP

                     DUF260  85 qqleqlkaelallke 99 
                                +q+++l++el+++++
  Tp57577_TGAC_v2_mRNA18620 115 RQVQRLQKELDSANA 129
                                **********99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089127.78630131IPR004883Lateral organ boundaries, LOB
PfamPF031956.3E-4431128IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MRSIDKFYDT IYCFFFSAGK TMASSSSYNS PCAACKFLRR KCMPGCIFAP YFPPEEPQKF  60
ANVHKIFGAS NVTKILNELL PHQREDAVNS LAYEAEARVR DPVYGCVGAI SFLQRQVQRL  120
QKELDSANAD LLRFAYNDSS LPPLPPLVVP ASFHHHHHHQ QLTPQRQLQF GSRFGNGGNI  180
DGSGFYSFPY AIPWNDTSSD DLSGGVGGRG GGVGGGNL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-65241384118LOB family transfactor Ramosa2.1
5ly0_B3e-65241384118LOB family transfactor Ramosa2.1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtNot known; ectopic expression of LOB leads to alterations in the size and shape of leaves and floral organs and causes male and female sterility.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00581DAPTransfer from AT5G63090Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA18620
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Positively regulated within the shoot apex by both ASYMMETRIC LEAVES 1 (AS1) and ASYMMETRIC LEAVES 2 (AS2/LBD6) and by KNAT1. {ECO:0000269|PubMed:11934861}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ6531631e-152JQ653163.1 Pisum sativum elongated petiolule 1-like protein (APU) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003601210.24e-97LOB domain-containing protein 25
RefseqXP_024634900.14e-97LOB domain-containing protein 25
RefseqXP_024634901.14e-97LOB domain-containing protein 25
RefseqXP_024634902.14e-97LOB domain-containing protein 25
RefseqXP_024634903.14e-97LOB domain-containing protein 25
RefseqXP_024634904.14e-97LOB domain-containing protein 25
SwissprotQ9FML49e-72LOB_ARATH; Protein LATERAL ORGAN BOUNDARIES
TrEMBLA0A2K3NB251e-144A0A2K3NB25_TRIPR; Protein lateral organ boundaries-like
STRINGAES714612e-96(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF109134112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63090.43e-75LBD family protein
Publications ? help Back to Top
  1. Xu C, et al.
    Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration.
    Nat Plants, 2018. 4(2): p. 108-115
    [PMID:29358751]
  2. Liu J, et al.
    The WOX11-LBD16 Pathway Promotes Pluripotency Acquisition in Callus Cells During De Novo Shoot Regeneration in Tissue Culture.
    Plant Cell Physiol., 2018. 59(4): p. 734-743
    [PMID:29361138]