PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA18412
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family CAMTA
Protein Properties Length: 962aa    MW: 108417 Da    PI: 6.1866
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA18412genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1160.14.3e-50141293117
                       CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyY 85 
                                +e kkrwlk+ e++ iL++++  e+t+ + +rp+ g++ L+n++++r+frkDG++w+kkkdg+tv E+he+LKvg+ve+l+cyY
  Tp57577_TGAC_v2_mRNA18412  14 QEaKKRWLKPIEVYYILQHHDMCEFTNMPLNRPRGGAVYLFNKRVMRFFRKDGHNWRKKKDGRTVAEAHERLKVGNVEALNCYY 97 
                                5669******************************************************************************** PP

                       CG-1  86 ahseenptfqrrcywlLeeelekivlvhylev 117
                                ah+een++fqrr+yw+L+ e+e++vlvhy+++
  Tp57577_TGAC_v2_mRNA18412  98 AHGEENRSFQRRSYWMLNPEYEHVVLVHYRDT 129
                                ******************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143770.8659135IPR005559CG-1 DNA-binding domain
SMARTSM010761.9E-6212130IPR005559CG-1 DNA-binding domain
PfamPF038591.9E-4315128IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.104.2E-4388461IPR013783Immunoglobulin-like fold
SuperFamilySSF812964.9E-14388472IPR014756Immunoglobulin E-set
Gene3DG3DSA:1.25.40.209.1E-16584680IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.671585689IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484035.75E-16588680IPR020683Ankyrin repeat-containing domain
PfamPF127965.0E-8603682IPR020683Ankyrin repeat-containing domain
CDDcd002048.14E-14605677No hitNo description
SMARTSM002480.015618650IPR002110Ankyrin repeat
PROSITE profilePS5008810.686618650IPR002110Ankyrin repeat
SMARTSM00248310657686IPR002110Ankyrin repeat
SMARTSM0001552735757IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525408.5E-11736837IPR027417P-loop containing nucleoside triphosphate hydrolase
PROSITE profilePS500967.62736764IPR000048IQ motif, EF-hand binding site
SMARTSM000155785807IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.766787815IPR000048IQ motif, EF-hand binding site
PfamPF006120.02788806IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0011808830IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.67809833IPR000048IQ motif, EF-hand binding site
PfamPF006127.5E-5811830IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 962 aa     Download sequence    Send to blast
MLPGLQYNIN DLFQEAKKRW LKPIEVYYIL QHHDMCEFTN MPLNRPRGGA VYLFNKRVMR  60
FFRKDGHNWR KKKDGRTVAE AHERLKVGNV EALNCYYAHG EENRSFQRRS YWMLNPEYEH  120
VVLVHYRDTN EGTSNSGPAT QLSPFSQSRS SYTTQNPETT SIVGDSCEPN QNFSSPGSLE  180
VTSDIVIMNN GMDHLEKTNA QAFRQLEEQL SLNDESFTEI SPFYREHEVP QEICARPDDH  240
EQLYDGYNGT KVGSGNHYHE LLDHSCPGGN EKTLYWTEML ESSKFSSVIK LPEQHAYKAF  300
ENEKPLPSPG REMIANQEIS YWLHPNNNND ENSVFSLTQH IGGVNMSPYS SVETQGTNSD  360
YYERLFDQSQ IQEPLDAYSR FAGGQKFTIM TVSPEYCYAT EASKVIIIGS FLCLPMDSTW  420
ACMFGDVEVP AEILKDGVIC CEAPSHLVGK VSLCITSGNK EPCSEVKEFE FRNKTNSCTH  480
CNSLETEAAR SPEELLLLVR FAEMLLSTSI MKDDSTESGS HLSTEQKADD DSWSHIIDAL  540
LVGNETSSGT IDWILQELLK DKLQHWLSCR SNERDEGAGC SLSKKEQGII HMVSGLGFEW  600
ALNPILSYGV NVNFRDINGR TALHWAARFG REKMVASLIA AGAFAGAVTD PTSQDPNGKT  660
AATIATSNGH KGLAGYLAEA DLTSHLSSLT LEKCEVPKDS SELEAELTVR SVSKKNLEAS  720
DDEVSLKNTL GAVRNASQAA ARIQAAFRAH SFKKRIEREA ASATCLNGYV NGVGSIGGYA  780
RSLRDCNSAA LSIQKKYRGW KGRKDFLALR QKVVKIQAHV RGYQTRKQYK VMIWAVGILD  840
KVVLRWRRKR VGLRSSPQEN NSKEESDDED FLKAFRQEKV HVAIEKALGR VRSMVHSPHA  900
RQQYNRLLEM YRKAKAETLL STSLQNAWNI EEDETLLSTS VQNAWNIEED DDLFQFPWET  960
L*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:25039701, ECO:0000305|PubMed:11925432}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA18412
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:28351986}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1475380.0AC147538.24 Medicago truncatula clone mth2-135c7, complete sequence.
GenBankCU5711540.0CU571154.3 M.truncatula DNA sequence from clone MTH2-59O16 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003601756.20.0calmodulin-binding transcription activator 4
SwissprotQ9FYG20.0CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBLA0A2K3NNL90.0A0A2K3NNL9_TRIPR; Calmodulin-binding transcription activator 4-like protein (Fragment)
STRINGXP_004502279.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45482950
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.10.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]