 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Tp57577_TGAC_v2_mRNA1833 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
|
| Family |
LBD |
| Protein Properties |
Length: 177aa MW: 19932.9 Da PI: 6.6419 |
| Description |
LBD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Tp57577_TGAC_v2_mRNA1833 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF260 | 136.1 | 1.3e-42 | 18 | 117 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85
+CaaCk+lrr+C+++Cvlapyfp ++p kf ++h++FGasn++k+l++lpe +r da+ss+vyeA+ar+rdPvyG++g i +lq+
Tp57577_TGAC_v2_mRNA1833 18 PCAACKILRRRCVEKCVLAPYFPPTDPLKFTIAHRVFGASNIIKFLQELPEPQRADAVSSMVYEANARIRDPVYGCAGAICQLQK 102
7************************************************************************************ PP
DUF260 86 qleqlkaelallkee 100
q+++l+++la++++e
Tp57577_TGAC_v2_mRNA1833 103 QVSELQTQLAKAQAE 117
***********9987 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 177 aa
Download sequence Send
to blast |
MFYSSRYHTP DQNRDISPCA ACKILRRRCV EKCVLAPYFP PTDPLKFTIA HRVFGASNII 60
KFLQELPEPQ RADAVSSMVY EANARIRDPV YGCAGAICQL QKQVSELQTQ LAKAQAEIVN 120
MHCQQANLVA LICMEMSNQS SPQDHNMIIN QPQPHVDMSC FLEDNNFGSA WEPLWT*
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AC144484 | 1e-145 | AC144484.5 Medicago truncatula clone mth2-30o16, complete sequence. |
| GenBank | AC152818 | 1e-145 | AC152818.17 Medicago truncatula clone mth2-85g12, complete sequence. |
