PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA18231

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

MYB

Protein Properties

Length: 341aa MW: 38200.7 Da PI: 9.9917

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA18231	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	49.1	1.3e-15	30	77	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd++l++++k G g+W++ ++ g+ R++k+c++rw +yl Tp57577_TGAC_v2_mRNA18231 30 KGAWSKEEDDRLIKYIKDNGEGCWRSLPKAAGLARCGKSCRLRWINYL 77 79********************************************97 PP
2	Myb_DNA-binding	57.4	3.3e-18	83	127	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T++Edel++++++ G++ W++Ia++++ gRt++++k++w+++ Tp57577_TGAC_v2_mRNA18231 83 RGNFTPDEDELIINLHTSVGNK-WSLIAQKLP-GRTDNEIKNYWNTH 127 89******************.*****.**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.0E-23	21	80	IPR009057	Homeodomain-like
PROSITE profile	PS51294	17.275	25	77	IPR017930	Myb domain
SuperFamily	SSF46689	3.56E-28	28	124	IPR009057	Homeodomain-like
SMART	SM00717	5.2E-12	29	79	IPR001005	SANT/Myb domain
Pfam	PF00249	3.3E-14	30	77	IPR001005	SANT/Myb domain
CDD	cd00167	3.65E-10	32	77	No hit	No description
PROSITE profile	PS51294	27.893	78	132	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	4.3E-28	81	132	IPR009057	Homeodomain-like
SMART	SM00717	1.8E-16	82	130	IPR001005	SANT/Myb domain
Pfam	PF00249	1.3E-15	83	127	IPR001005	SANT/Myb domain
CDD	cd00167	3.20E-12	85	128	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 341 aa Download sequence Send to blast
FSLFSPYSLS NQQTKTMGRS PCCEKQHTNK GAWSKEEDDR LIKYIKDNGE GCWRSLPKAA 60 GLARCGKSCR LRWINYLRPD LKRGNFTPDE DELIINLHTS VGNKWSLIAQ KLPGRTDNEI 120 KNYWNTHIKR KLQSXXXXXX XXXHLSNSSS SSISRNKIIK SEFPLFSTTT GGPSLKQKFV 180 VTDSGNGGGV EDSVSNTSSG VTVEEIAYPP PPPQINLELS LAPPSSSQQL QNGCLCRQTL 240 GLQNGGNHPC RCNNTIPIVP IVGGASXXXX XXYYRRRRCV CVIEERTESC LVRSGVIRHV 300 GWCGTVVCVC VVDRRRKEEK KKSRKTKQER GTRESMKHQH *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	1e-26	29	132	26	128	MYB TRANSFORMING PROTEIN
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the negative regulation of flavonol biosynthesis. Represses the early phenylpropanoid genes, phenylalanine ammonia-lyase (PAL), cinnamate 4-hydroxylase (C4H) and 4-coumarate-CoA ligase (4CL), as well as the flavonoid-specific genes, flavonoid 3'-hydroxylase (F3'H) and dihydroflavonol 4-reductase (DFR) (PubMed:24319076). Plays a role in seed germination inhibition. Negatively regulates the expression of the abscisic acid (ABA) signaling transcription factor ABI5 in seeds (PubMed:25053018). {ECO:0000269\|PubMed:24319076, ECO:0000269\|PubMed:25053018}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA18231

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by abscisic acid (ABA) and osmotic stress (PubMed:25053018). Induced by salt stress (PubMed:24319076, PubMed:25053018). {ECO:0000269\|PubMed:24319076, ECO:0000269\|PubMed:25053018}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004503863.1	2e-87	myb-related protein 308-like
Swissprot	Q42379	5e-74	MYB7_ARATH; Transcription factor MYB7
TrEMBL	A0A2K3LCQ5	1e-157	A0A2K3LCQ5_TRIPR; MYB-related protein 308-like protein
STRING	AET04900	6e-86	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF31	34	817

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16720.1	6e-72	myb domain protein 7

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA18231

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhou M, et al. Changing a conserved amino acid in R2R3-MYB transcription repressors results in cytoplasmic accumulation and abolishes their repressive activity in Arabidopsis. Plant J., 2015. 84(2): p. 395-403 [PMID:26332741] Lotkowska ME, et al. The Arabidopsis Transcription Factor MYB112 Promotes Anthocyanin Formation during Salinity and under High Light Stress. Plant Physiol., 2015. 169(3): p. 1862-80 [PMID:26378103] Zhou M, et al. LNK1 and LNK2 Corepressors Interact with the MYB3 Transcription Factor in Phenylpropanoid Biosynthesis. Plant Physiol., 2017. 174(3): p. 1348-1358 [PMID:28483877] Mondal SK,Roy S Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis. J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601 [PMID:28490275]