PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA18099
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family FAR1
Protein Properties Length: 638aa    MW: 73006.4 Da    PI: 6.5771
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA18099genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR159.88.3e-1954161190
                       FAR1   1 kfYneYAkevGFsvrkskskks....krngeitkrtfvCskegkreeekkk.............tekerrtraetrtgCkaklk 67 
                                +fY +YA+++GFs+r   ++k+    k++++i   ++vC+keg+++ +  +             + ++ ++r+e+r+gCka + 
  Tp57577_TGAC_v2_mRNA18099  54 DFYGQYAYKTGFSIRSMLKSKNnsknKKSDKIHYLRYVCNKEGFKKGSLLNpknkpisdspvviEFEKVKERPEERIGCKAGIS 137
                                6*************97544444344499999***************988888889********99999**************** PP

                       FAR1  68 vkkek.dgkwevtkleleHnHela 90 
                                +k+++  +++++++ e +H H+l 
  Tp57577_TGAC_v2_mRNA18099 138 LKLDEtLNVYKIYRWEGDHCHPLH 161
                                ****9899**************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.3E-1554161IPR004330FAR1 DNA binding domain
PROSITE profilePS5096610.682417451IPR007527Zinc finger, SWIM-type
SMARTSM005756.9E-4426453IPR006564Zinc finger, PMZ-type
PfamPF044348.6E-4427443IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 638 aa     Download sequence    Send to blast
MDLTSTSSGI SDIHSTEASG SEPLTSSDSS QCCHPDIKKS WDTLVFHSIK EVEDFYGQYA  60
YKTGFSIRSM LKSKNNSKNK KSDKIHYLRY VCNKEGFKKG SLLNPKNKPI SDSPVVIEFE  120
KVKERPEERI GCKAGISLKL DETLNVYKIY RWEGDHCHPL HREEHHCYLR SFREVNEVQG  180
QLAVINSKAG MSMRTSYEVM GQGVGGTENL SFRFSDLKNY LMTIRSKEMK KGEATVIQQF  240
FRNEALSKPS FYYDMQVDAA EDIASIFWAD GIMQLDYSLF GDVISFDTTY RTNNQYRPLD  300
DESDFDYNWD QMMKNCFDGS QLMRSVVKKY TPGSFAFIHR QYDLSFKYYY QEDTSKGSEL  360
NKFFKVFTIE KVDDPDEVDD HNDDDVDNDN GGASNSDEFQ EMSPNFEDLD RLDERVVTVD  420
IRTKSFSCTC RMFENRGFLC RHIFKILEFL GGSVQYHCLK TIPAQYVLKR WTRDVRLSVD  480
KLKSSMSVGT EDTTQAQRYQ QICAVTVQLS TRVCADAEAS QIFIDGVLEA GKKAEELLFS  540
KGIVTNPSSV TPSKSSKAIV VVGEPSSGKS TAPKXXXXXX XXXXXXXXXX XXXXXXXXXX  600
XKARERQKFI IERKKQKRED EEALKKKSAA GQMQEQQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1603614RERQKFIIERKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA18099
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024634480.11e-170protein FAR1-RELATED SEQUENCE 5-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14214215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-25FAR1-related sequence 5