PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA1803 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 163aa MW: 18701.7 Da PI: 9.923 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 31 | 3.1e-10 | 11 | 49 | 4 | 42 |
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 n+s r++t+ kR++ + K E+ +LC+++++ ii+s+ Tp57577_TGAC_v2_mRNA1803 11 VNESARKITYNKRKKSLNKSMAEITTLCGIDACGIIYSE 49 5999*********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00266 | 4.53E-16 | 1 | 81 | No hit | No description |
PROSITE profile | PS50066 | 11.774 | 1 | 49 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 5.2E-9 | 1 | 59 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.83E-16 | 2 | 81 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.6E-11 | 12 | 49 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 163 aa Download sequence Send to blast |
MKKKLKLAFM VNESARKITY NKRKKSLNKS MAEITTLCGI DACGIIYSEF HSEPEVWPSP 60 SEVQRIINKF KNHFEFEQGN KKKLSHETYL TRRVTKSKVQ LVKLEKNNLE MQKSLTLYQC 120 LLQESFIKTL NSDVLNVLAC EINGKLEEIA SKANELDTNA TR* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA1803 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013460430.1 | 2e-76 | agamous-like MADS-box protein AGL80 | ||||
TrEMBL | A0A2K3MHG4 | 1e-91 | A0A2K3MHG4_TRIPR; MADS-box transcription factor family protein | ||||
STRING | XP_004500453.1 | 2e-68 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF16302 | 3 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G65300.1 | 6e-29 | AGAMOUS-like 38 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA1803 |