PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA1803
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family M-type_MADS
Protein Properties Length: 163aa    MW: 18701.7 Da    PI: 9.923
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA1803genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF313.1e-101149442
                              -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
                    SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                               n+s r++t+ kR++ + K   E+ +LC+++++ ii+s+
  Tp57577_TGAC_v2_mRNA1803 11 VNESARKITYNKRKKSLNKSMAEITTLCGIDACGIIYSE 49
                              5999*********************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd002664.53E-16181No hitNo description
PROSITE profilePS5006611.774149IPR002100Transcription factor, MADS-box
SMARTSM004325.2E-9159IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.83E-16281IPR002100Transcription factor, MADS-box
PfamPF003192.6E-111249IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MKKKLKLAFM VNESARKITY NKRKKSLNKS MAEITTLCGI DACGIIYSEF HSEPEVWPSP  60
SEVQRIINKF KNHFEFEQGN KKKLSHETYL TRRVTKSKVQ LVKLEKNNLE MQKSLTLYQC  120
LLQESFIKTL NSDVLNVLAC EINGKLEEIA SKANELDTNA TR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA1803
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013460430.12e-76agamous-like MADS-box protein AGL80
TrEMBLA0A2K3MHG41e-91A0A2K3MHG4_TRIPR; MADS-box transcription factor family protein
STRINGXP_004500453.12e-68(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1630237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65300.16e-29AGAMOUS-like 38