PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA18002
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family bHLH
Protein Properties Length: 188aa    MW: 21068.3 Da    PI: 7.8964
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA18002genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.71.8e-072369654
                               HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                        HLH  6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                                e+E++RR ++   ++ Lr+ lP+ +    ++K s ++    A +Y++ L
  Tp57577_TGAC_v2_mRNA18002 23 REVEKQRRMQMSILYSSLRSSLPSdL---IKGKRSVSDHIAAAANYVQFL 69
                               699*********************77...******************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.37E-111488IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.55E-51772No hitNo description
PROSITE profilePS5088810.3661769IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.5E-72285IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MAEENQHKIL VPSDNDEKKI IRREVEKQRR MQMSILYSSL RSSLPSDLIK GKRSVSDHIA  60
AAANYVQFLK QKTNELETKR DSLKEMASSS MVEIGNELSS DPSRLVKCVK INIIQGGVEI  120
VICSGFEDFS SRLSDLLKII LEEGCDVVHC VTNQVNGKIF HTIKSEVKDL TCLNLARLQN  180
KLDHAIL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA18002
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1493041e-105AC149304.11 Medicago truncatula clone mth2-76g4, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003592389.11e-108transcription factor bHLH118
TrEMBLA0A2K3LUD81e-115A0A2K3LUD8_TRIPR; Transcription factor bHLH120
STRINGAES626401e-107(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF79233125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51790.17e-31bHLH family protein