PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA17951
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family NAC
Protein Properties Length: 383aa    MW: 44721.8 Da    PI: 6.7837
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA17951genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM101.79.9e-32241781128
                        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgkrknra...... 77 
                                lppG++F P d +l+++yLk k++g  ++    ik+vd+yk+ P++L+k +k  +eke+yfF++r+kky++g+r+nr       
  Tp57577_TGAC_v2_mRNA17951  24 LPPGYKFIPDDVDLIDYYLKYKLAGFLINP-PRIKDVDVYKYPPQELEKYYKFkGEKEMYFFTRRSKKYEEGSRPNRDvknhdg 106
                                79************************9988.66**************9644432678********************6355555 PP

                        NAM  78 tksgyWkatgkdkevlskkgelvglkktLvfy..................kgrapkge..........ktdWvmheyrl 128
                                ++ g+Wkatgk+++v++ ++ +vg k+tLv+y                  +      e          kt+W+m+eyr+
  Tp57577_TGAC_v2_mRNA17951 107 IHLGFWKATGKENSVMN-NNIEVGFKRTLVYYggkqdkpkqnkgkedkpkQ------EksnesiktnwKTNWIMQEYRI 178
                                559**************.9999**********9988877777655444331......133444566679********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.31E-4020200IPR003441NAC domain
PROSITE profilePS5100539.11324202IPR003441NAC domain
PfamPF023651.6E-1725178IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MDPQLFNDNC TTNNEAEDPC IINLPPGYKF IPDDVDLIDY YLKYKLAGFL INPPRIKDVD  60
VYKYPPQELE KYYKFKGEKE MYFFTRRSKK YEEGSRPNRD VKNHDGIHLG FWKATGKENS  120
VMNNNIEVGF KRTLVYYGGK QDKPKQNKGK EDKPKQEKSN ESIKTNWKTN WIMQEYRIKD  180
LTSSSSTSLN MDDWVLCKIY EHQYGMKKSQ LEGQTSKQVT ISPGVYVAPQ CQLNQCHQTQ  240
CMQSSLSPNM IDNSQFQFNQ QYYKQMQDVS SESQMVSNQP NHQHSESQPA EVSVPSNTIG  300
ITHCQSNQYQ YENTQQMQAS SSSTMMVTPQ YHFNQQHYSQ DQQMQGSSRV DIVYDSHMPH  360
HQAYQPCESQ MKEYYFDPSQ FI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-332220013166Stress-induced transcription factor NAC1
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA17951
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2Z6M1311e-104A0A2Z6M131_TRISU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3074122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27410.22e-36NAC family protein