PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA17839
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C2H2
Protein Properties Length: 285aa    MW: 32822.2 Da    PI: 8.6684
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA17839genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2187.7e-06118137120
                                EEETTTTEEESSHHHHHHHH CS
                    zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                                ++C++C+k+F+r  n++ H+
  Tp57577_TGAC_v2_mRNA17839 118 FSCSICNKTFNRYNNMQMHM 137
                                89*****************9 PP
2zf-C2H216.52.4e-05202224123
                                EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                + C +Cgk+F  k + ++H +++
  Tp57577_TGAC_v2_mRNA17839 202 FICRKCGKTFAVKGDWRTHEKNC 224
                                89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.03E-6109141No hitNo description
SMARTSM003550.059118140IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.4E-6118137IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.554118145IPR007087Zinc finger, C2H2
PfamPF128747.5E-5118137No hitNo description
PROSITE patternPS000280120140IPR007087Zinc finger, C2H2
SMARTSM00355190165197IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.609.3E-6188222IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.8E-6188222No hitNo description
PROSITE profilePS501578.559202222IPR007087Zinc finger, C2H2
SMARTSM0035532202222IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MAMMEFDVED NNFIEWLKPS NSSLSSLTSS SSSSSSTTQN ETIQFFPILS AKSSKEDQEH  60
EVPQIKVFDV ALHIGLPNTK ENDEKFFHAK EEEKPSKKTF QRFWIPTSAQ ILVGPMQFSC  120
SICNKTFNRY NNMQMHMWGH GSEFRKGPDS LRGTQPAAML RLPCYCCAQG CKNNINHPRA  180
KPLKDFRTLQ THYKRKHGTK PFICRKCGKT FAVKGDWRTH EKNCGKLWYC TCGSDFKHKR  240
SLKDHIRSFG KEHNRLPGLD DRAFEEEEEK ECVTYSDEDK VART*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA17839
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1445151e-152AC144515.14 Medicago truncatula clone mth2-5j8, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024636648.11e-153zinc finger protein WIP3
RefseqXP_024636649.11e-153zinc finger protein WIP3
SwissprotQ9SGD11e-107ZWIP3_ARATH; Zinc finger protein WIP3
TrEMBLA0A396I4F51e-152A0A396I4F5_MEDTR; Putative transcription factor C2H2 family
STRINGAES883381e-153(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08290.11e-104WIP domain protein 3
Publications ? help Back to Top
  1. Zhou X,Meier I
    Efficient plant male fertility depends on vegetative nuclear movement mediated by two families of plant outer nuclear membrane proteins.
    Proc. Natl. Acad. Sci. U.S.A., 2014. 111(32): p. 11900-5
    [PMID:25074908]