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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA17830 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | NF-YB | ||||||||
Protein Properties | Length: 136aa MW: 15088.1 Da PI: 8.2132 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 41.7 | 2.7e-13 | 6 | 99 | 7 | 95 |
NF-YB 7 flPianvsrimkkvlPa...nakis..kdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvyl 87 lP + v r++k l + ++ i+ kda e + fi ++++ a+d c++ kr+ in++d++ al + f ++v plk+ l Tp57577_TGAC_v2_mRNA17830 6 DLPKTIVRRVVKDKLSTcsdDGDIAvhKDALLAFSESARIFIHYLSATANDICRESKRQIINAEDVFKALEETEFTEFVSPLKASL 91 5788889999998886422244444338999999**************************************************** PP NF-YB 88 kkyreleg 95 +++r+ ++ Tp57577_TGAC_v2_mRNA17830 92 EEFRKKNA 99 ****8765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 1.5E-31 | 6 | 128 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 2.19E-24 | 7 | 118 | IPR009072 | Histone-fold |
Pfam | PF00808 | 4.0E-9 | 7 | 75 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 136 aa Download sequence Send to blast |
MAETEDLPKT IVRRVVKDKL STCSDDGDIA VHKDALLAFS ESARIFIHYL SATANDICRE 60 SKRQIINAED VFKALEETEF TEFVSPLKAS LEEFRKKNAG KKAAVSKGKG DEKGNEKKKK 120 RKLEKGEPSD KGDDQ* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 115 | 122 | EKKKKRKL |
2 | 116 | 121 | KKKKRK |
3 | 117 | 122 | KKKRKL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA17830 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JQ918277 | 1e-132 | JQ918277.1 Medicago truncatula nuclear transcription factor Y subunit B4 (NF-YB4) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004506183.1 | 2e-74 | DNA polymerase epsilon subunit 3 | ||||
TrEMBL | A0A2K3LWD2 | 1e-91 | A0A2K3LWD2_TRIPR; DNA polymerase epsiion subunit 3-like protein | ||||
STRING | XP_004506183.1 | 7e-74 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11863 | 32 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G27470.1 | 2e-41 | nuclear factor Y, subunit B11 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA17830 |