![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Tp57577_TGAC_v2_mRNA17655 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
|
||||||||
Family | CAMTA | ||||||||
Protein Properties | Length: 970aa MW: 107768 Da PI: 5.7836 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 176.4 | 3.6e-55 | 15 | 131 | 2 | 117 |
CG-1 2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycy 84 ++e ++rwlk+ e++ iL+n+e++++t+e++++p+sgsl+L+nr+++r+fr+DG+ w+kk+dg++v E+he+LKvg+ve+++cy Tp57577_TGAC_v2_mRNA17655 15 YQEaQRRWLKPAEVMYILQNHEQYQFTQEPPQQPTSGSLFLFNRRVLRFFRRDGHAWRKKRDGRAVGEAHERLKVGNVEAINCY 98 566699****************************************************************************** PP CG-1 85 YahseenptfqrrcywlLeeelekivlvhylev 117 Yah+e+nptfqrr+yw+L+ ++++ivlvhy+++ Tp57577_TGAC_v2_mRNA17655 99 YAHGEQNPTFQRRSYWMLDPAFDHIVLVHYRDT 131 ******************************997 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 79.798 | 11 | 137 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 6.4E-76 | 14 | 132 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 5.4E-48 | 17 | 130 | IPR005559 | CG-1 DNA-binding domain |
Gene3D | G3DSA:2.60.40.10 | 2.2E-8 | 404 | 492 | IPR013783 | Immunoglobulin-like fold |
CDD | cd00102 | 1.44E-4 | 406 | 491 | No hit | No description |
Pfam | PF01833 | 5.0E-8 | 406 | 489 | IPR002909 | IPT domain |
SuperFamily | SSF81296 | 2.18E-17 | 406 | 490 | IPR014756 | Immunoglobulin E-set |
Gene3D | G3DSA:1.25.40.20 | 9.9E-16 | 600 | 695 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 15.512 | 601 | 693 | IPR020683 | Ankyrin repeat-containing domain |
SuperFamily | SSF48403 | 3.42E-16 | 602 | 695 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 2.55E-13 | 606 | 693 | No hit | No description |
Pfam | PF12796 | 5.7E-8 | 616 | 694 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 0.0038 | 634 | 663 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50088 | 11.06 | 634 | 666 | IPR002110 | Ankyrin repeat |
SMART | SM00015 | 89 | 751 | 773 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 7.895 | 752 | 781 | IPR000048 | IQ motif, EF-hand binding site |
SuperFamily | SSF52540 | 5.58E-7 | 799 | 857 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
SMART | SM00015 | 1.6 | 809 | 831 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 7.968 | 810 | 839 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.02 | 812 | 830 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 4.2E-4 | 832 | 854 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 9.359 | 833 | 858 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 3.0E-5 | 835 | 854 | IPR000048 | IQ motif, EF-hand binding site |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 970 aa Download sequence Send to blast |
MTISIGLEYN INDLYQEAQR RWLKPAEVMY ILQNHEQYQF TQEPPQQPTS GSLFLFNRRV 60 LRFFRRDGHA WRKKRDGRAV GEAHERLKVG NVEAINCYYA HGEQNPTFQR RSYWMLDPAF 120 DHIVLVHYRD TSEGRLSSGP GTQLSPGSSS AYSQSPSSYS NHNPGSTSII DDSYEPNQSF 180 YSPVSAEVTS ANSGMSHSEG TEAESGTSAD LKITQVLRRL EVQLSLNEDN FEEIAPFRNE 240 HEVTHDSIAQ NHQAVICKQE ESAALSGPDD QGLLYDGYNG RQGDNGESYR ELLDHDFPDG 300 NEKALSWKNV YIPAGNQESS PSSSIREPVT NLEDDCWANF NTNNAGNSVF SLPQAVGGVT 360 LPPYSSMVET QEASSGYYAT LFNPSQIGAS HDAGSSLTVS QKQKFTIKAV SPGWGYASET 420 TKVYIIGSFL CHPSNSAWAC MLGDVEVPVE IIQDGVMCCE VPSHIPGKVT LCITSGNRES 480 CSEVREFEYR DKTESYTHYT PSETEASRTP EELLLLVRFG QMLLSASSVS NDNNESGIFI 540 KQKADDNSWS HIIEALLFGS GTSSGTINWL LEELLKDKLQ VWLTYRSREI DEETGCSLSK 600 KEQGIIHMVA GLGFEWALNP ILSCGVNINF RDINGWTALH WAARFGREKM VASLIASGAS 660 AGAVTDPSAQ DPTGKTAASI ASSSGHKGLA GYLSEVALTS HLSSLTLKES ELSKSSAELQ 720 ADLTVSNVSK ENIAFSEDRA SLKDSLAAVR NTTQAAARIQ AAFRSHSFRK RRAKETNAVM 780 SGHDISASSF GDMPELYAMS KLAFRNSRES NSAALSIQKK YRGWKGRKDF LSLRQKVVKI 840 QAHVRGYQVR KHYKVLWAVG ILDKVVLRWR RKGVGLRGFK PEVAVNENEE EDEDEDILKV 900 FRKQKVDGEI DKAVSRVLSM VKSPDAREQY HRMLEKYRQA KAELAQTSEE KSLTTSIEDY 960 LNMDDDDFY* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:25039701, ECO:0000305|PubMed:11925432}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA17655 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:28351986}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024629208.1 | 0.0 | calmodulin-binding transcription activator 4 isoform X1 | ||||
Swissprot | Q9FYG2 | 0.0 | CMTA4_ARATH; Calmodulin-binding transcription activator 4 | ||||
TrEMBL | A0A2K3P0M9 | 0.0 | A0A2K3P0M9_TRIPR; Calmodulin-binding transcription activator 4-like protein | ||||
STRING | XP_004504403.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4548 | 29 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G67310.1 | 0.0 | Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains |
Link Out ? help Back to Top | |
---|---|
Phytozome | Tp57577_TGAC_v2_mRNA17655 |
Publications ? help Back to Top | |||
---|---|---|---|
|