PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Function |

Cis-element |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA1758

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

GRAS

Protein Properties

Length: 742aa MW: 83930 Da PI: 6.3064

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA1758	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	350.2	3.3e-107	369	739	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfs 85 l++lL+ cA+av+++d++ a++lL++++++++ gd +qRla+ f+ +L+arla+++s++yk l +++ts ++ l+a+ l+ Tp57577_TGAC_v2_mRNA1758 369 LRTLLILCAQAVAADDHKSAHELLKQIRQHSNIFGDGNQRLAHIFADGLEARLAGTGSQIYKGLISKRTS---AADYLKAYYLYL 450 5789**********************************************************999998...9******* PP GRAS 86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakf 168 ++P+ k++ ++ N +I+ +v++++rvHi+Df+i +G+QWp+L+q L+ Rp+gpp+lRiTg++ p++g +e++ etg+rLa + Tp57577_TGAC_v2_mRNA1758 451 AACPFRKMTSFVSNVTIMHSVASSTRVHIVDFGILYGFQWPTLIQRLSLRPGGPPKLRITGIDFPQPGfkPAERIIETGSRLAAY 535 ***************************************************************999*********** PP GRAS 169 AeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesF 253 Ae+++vpfe+n+ +ak++e+++leeL+++++E l+V + ++ ++lldesv ++s+r++vL+l+++++P++++++ + n++ F Tp57577_TGAC_v2_mRNA1758 536 AESFNVPFEYNA-IAKKWETIQLEELKIEKDEYLVVTCFYRGKNLLDESVVVDSPRNKVLNLIRRIKPDIFIHCIINGAFNAPFF 619 ********.7******************************************************************* PP GRAS 254 lerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqak 338 ++rf eal ++s+lfd+l++ +pre+ er+ +E+e++g+e+ nv+aceg er+er et+++W+ r+ +aGF + Tp57577_TGAC_v2_mRNA1758 620 VTRFREALFHFSSLFDMLDSIVPREDWERMLIEKEIFGKEALNVIACEGCERVERPETYRQWQIRILRAGFLQXXXXXXXXXXXX 704 **********************************************************************99999999888 PP GRAS 339 lllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 + ++e+ ++l+ gWk+r ++++S+W+ Tp57577_TGAC_v2_mRNA1758 705 XXXXXXX-XXFVIDEDGKWLLNGWKGRIVYALSCWK 739 8888887.55***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	62.509	343	720	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.2E-104	369	739	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 742 aa Download sequence Send to blast
MMDPHLKGFC GSTNEIQLRN QSLSVLHNQR LENGFFDQSR EFGSNLIPAD TPSSTTTSIS 60 THEEPSPEDC EFSDAVLSYI NNILMEEDME DKTCMLQDSL DLQIAEKSFY EVIGEKYPVS 120 PLGEPPNLGN QIDGVGDNSF FDSYGSFVDD GDLSSIFMNN SSRRNLREVQ FPHHDFPVNS 180 ILQSSYSSTN SVKSTVEGHL DSPDSILQVP DQNCENQPIL QFQKGVEEAN KFLPSGNGLF 240 HNFDVAKFSI LEPKVMKDDL SVKAEKDERE SFLFGSKGRK HPHGEEVDVE ENRSSKQAAI 300 YSEPMLRSTM ADTILLHSLG DGKTHFTARR EALQIKNNMI MTPSNKSKAR TSGKGRGKKQ 360 NGKKEVIDLR TLLILCAQAV AADDHKSAHE LLKQIRQHSN IFGDGNQRLA HIFADGLEAR 420 LAGTGSQIYK GLISKRTSAA DYLKAYYLYL AACPFRKMTS FVSNVTIMHS VASSTRVHIV 480 DFGILYGFQW PTLIQRLSLR PGGPPKLRIT GIDFPQPGFK PAERIIETGS RLAAYAESFN 540 VPFEYNAIAK KWETIQLEEL KIEKDEYLVV TCFYRGKNLL DESVVVDSPR NKVLNLIRRI 600 KPDIFIHCII NGAFNAPFFV TRFREALFHF SSLFDMLDSI VPREDWERML IEKEIFGKEA 660 LNVIACEGCE RVERPETYRQ WQIRILRAGF LQXXXXXXXX XXXXXXXXXX XXXFVIDEDG 720 KWLLNGWKGR IVYALSCWKP A*

Sequence ? help Back to Top

Protein Sequence Length: 742 aa Download sequence Send to blast

MMDPHLKGFC GSTNEIQLRN QSLSVLHNQR LENGFFDQSR EFGSNLIPAD TPSSTTTSIS  60
THEEPSPEDC EFSDAVLSYI NNILMEEDME DKTCMLQDSL DLQIAEKSFY EVIGEKYPVS  120
PLGEPPNLGN QIDGVGDNSF FDSYGSFVDD GDLSSIFMNN SSRRNLREVQ FPHHDFPVNS  180
ILQSSYSSTN SVKSTVEGHL DSPDSILQVP DQNCENQPIL QFQKGVEEAN KFLPSGNGLF  240
HNFDVAKFSI LEPKVMKDDL SVKAEKDERE SFLFGSKGRK HPHGEEVDVE ENRSSKQAAI  300
YSEPMLRSTM ADTILLHSLG DGKTHFTARR EALQIKNNMI MTPSNKSKAR TSGKGRGKKQ  360
NGKKEVIDLR TLLILCAQAV AADDHKSAHE LLKQIRQHSN IFGDGNQRLA HIFADGLEAR  420
LAGTGSQIYK GLISKRTSAA DYLKAYYLYL AACPFRKMTS FVSNVTIMHS VASSTRVHIV  480
DFGILYGFQW PTLIQRLSLR PGGPPKLRIT GIDFPQPGFK PAERIIETGS RLAAYAESFN  540
VPFEYNAIAK KWETIQLEEL KIEKDEYLVV TCFYRGKNLL DESVVVDSPR NKVLNLIRRI  600
KPDIFIHCII NGAFNAPFFV TRFREALFHF SSLFDMLDSI VPREDWERML IEKEIFGKEA  660
LNVIACEGCE RVERPETYRQ WQIRILRAGF LQXXXXXXXX XXXXXXXXXX XXXFVIDEDG  720
KWLLNGWKGR IVYALSCWKP A*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	2e-43	358	740	8	380	Protein SCARECROW
5b3h_A	2e-43	358	740	7	379	Protein SCARECROW
5b3h_D	2e-43	358	740	7	379	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA1758

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013448874.1	0.0	scarecrow-like protein 9
Swissprot	O80933	0.0	SCL9_ARATH; Scarecrow-like protein 9
TrEMBL	A0A2K3PN37	0.0	A0A2K3PN37_TRIPR; SCARECROW-like protein 9-like
STRING	XP_004492362.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF131	34	339

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	0.0	GRAS family protein

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA1758