PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA17538
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family FAR1
Protein Properties Length: 404aa    MW: 45908.7 Da    PI: 7.7029
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA17538genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR179.75.5e-25132222191
                       FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtklel 83 
                                +fYneY+k++GF +r+++ +ksk +g  t+r+f+C keg+r  +k++   ++ +raetr+gC+a++++++++  gk++v +++ 
  Tp57577_TGAC_v2_mRNA17538 132 DFYNEYSKKMGFGIRREYGNKSKIDGVLTSRRFTCFKEGNRGVDKRD-YLTKDRRAETRIGCQARMVISLDRkIGKYKVVDFVA 214
                                6******************************************9999.99999*****************9989********** PP

                       FAR1  84 eHnHelap 91 
                                +HnH l+p
  Tp57577_TGAC_v2_mRNA17538 215 QHNHMLQP 222
                                *****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.4E-20132222IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
LTEFRLFAVL KFHTAVVIAA CCSFQVSLLS RHHSAGCCXX SSSPLVAPSS SPLIRSVSST  60
VFCSATLPHI VYEVIGSYLS ENMNGSSTPI AEGVQQLVNN IQANIVDHGR ESDVNYIPHL  120
EMEFESEVAA YDFYNEYSKK MGFGIRREYG NKSKIDGVLT SRRFTCFKEG NRGVDKRDYL  180
TKDRRAETRI GCQARMVISL DRKIGKYKVV DFVAQHNHML QPNEYVHMIR SHRXXXXXXL  240
ADESGLKPKD FHNYVSKQAG GKEIIGYTRQ DLKNYLRTKR MHTLRFGEVG ALLMHFKQQS  300
ENPSFFYEFQ MDVEEQITNI FWADAQMIND YGYFGDVITF DTTYKTNKDY QHVTAYQHEA  360
ASQHGTAYQH GTVYQLGAAS QHGTAYQHEA ASQHGTAYQL FYI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA17538
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027191736.11e-141protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A2Z6N2Q31e-157A0A2Z6N2Q3_TRISU; Uncharacterized protein
STRINGXP_004503202.11e-139(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF30451449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-47FAR1-related sequence 5