PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA17430
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family CAMTA
Protein Properties Length: 926aa    MW: 105084 Da    PI: 7.8838
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA17430genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1165.77.8e-52301463118
                       CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyY 85 
                                +e ++rwl+++ei+a+L n++ +++  ++ + pksg++iL++rkk+r+frkDG++wkkkkdgktv+E+he+LKvg+ e +++yY
  Tp57577_TGAC_v2_mRNA17430  30 EEaRTRWLRPNEIHAMLCNHKYFTINVKPMNLPKSGTIILFDRKKLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYY 113
                                4559******************************************************************************** PP

                       CG-1  86 ahseenptfqrrcywlLeeelekivlvhylevk 118
                                ah+++ p+f rrcywlL+++le+ivlvhy+e++
  Tp57577_TGAC_v2_mRNA17430 114 AHGQDSPNFVRRCYWLLDKSLEHIVLVHYRETQ 146
                                ******************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143777.6925151IPR005559CG-1 DNA-binding domain
SMARTSM010761.7E-7528146IPR005559CG-1 DNA-binding domain
PfamPF038593.4E-4531144IPR005559CG-1 DNA-binding domain
SuperFamilySSF812968.4E-16367454IPR014756Immunoglobulin E-set
PfamPF018331.7E-5368453IPR002909IPT domain
SuperFamilySSF484031.18E-17543664IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.6E-16556664IPR020683Ankyrin repeat-containing domain
CDDcd002044.26E-14560661No hitNo description
PfamPF127966.4E-7567631IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.3569634IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008811.434602634IPR002110Ankyrin repeat
SMARTSM002485.1E-6602631IPR002110Ankyrin repeat
SMARTSM002482600641672IPR002110Ankyrin repeat
SuperFamilySSF525402.66E-6709817IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM0001567765787IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500966.614767792IPR000048IQ motif, EF-hand binding site
SMARTSM000155.1788810IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.95789817IPR000048IQ motif, EF-hand binding site
SMARTSM0001513868890IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.041870898IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 926 aa     Download sequence    Send to blast
MANILSGQLV GSEIHGFHTL QELDVPSIME EARTRWLRPN EIHAMLCNHK YFTINVKPMN  60
LPKSGTIILF DRKKLRNFRK DGHNWKKKKD GKTVKEAHEH LKVGNEERIH VYYAHGQDSP  120
NFVRRCYWLL DKSLEHIVLV HYRETQESQG SPITPVHSNS TTASDPTAPW ILSEEIDSGT  180
KTAYASEIND NTTVKSHELR LHELNTLEWD DLVANDLNTS TVPNGGKLPY FDQQNQILLN  240
GSFSNVASNA SAGINSFDNS TQPIAASNSV PYTFSGVTLQ TIYNQGNQNA QNSHHVSSSG  300
VDSLNTLVND RLQSQDSFGM WVNQIMSDSP CSVDDSALGS SATPVNEPYS SLDVDNQQLS  360
LPEQIFNLTD VSPVWVSSTE KSKILVTGLF HKDYLHLPKS NLMCVCGDTS VPVEIVQEGV  420
YRCWVPPHSP GFVNLYLSFD GHNPISQVVN FEYRTPVLHD PVASVEEKNW DEFRLQMRLA  480
YLLFAKQQSL DVISSKVSPS RLKEAREFSL KTSFISNTWQ YLSKSTLDNK IPFSQAKDAL  540
FGIALKNRLK EWLSERIVLG SKTTEYDAQG QSVIHLCAIL EYTWAVTLFS WSGLSLDFRD  600
KFGWTALHWA AYYGREKMVA TLLSAGAKPN LVTDPTHQNP GGCTAADLAY TRGYHGLAAY  660
LSEKSLVEQF NDMSLAGNIS GSLETSTDDP VNSENLTEEQ LYLKDTLAAY RTAADAAARI  720
QEAYRQHSLK LQTEAVEFSS PEAEARKIVA AMKIQHAFRN FETKKVMAAA ARIQYRFRTW  780
KIRRNFLNLR HQAIRIQAAF RSFQQRKHYC KILWSVSVVE KAVLRWRLKR KGFRGLQLNT  840
EEADGDQNQQ SDAEEDFFRT SRKQAEERVE RSVIRVQAMF RSKKAQEDYR RMKLALNQAK  900
LEREYEKVLS NEVDMEKKTQ FSRRS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17188RKKLRNFRKDGHNWKKKK
27287KKLRNFRKDGHNWKKK
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:14581622, ECO:0000269|PubMed:28351986, ECO:0000305|PubMed:11925432}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00435DAPTransfer from AT4G16150Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA17430
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269|PubMed:12218065}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1267800.0AC126780.18 Medicago truncatula chromosome 8 clone mth2-10n4, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003609751.20.0calmodulin-binding transcription activator 5
RefseqXP_024637895.10.0calmodulin-binding transcription activator 5
SwissprotO234630.0CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBLA0A2K3NXA80.0A0A2K3NXA8_TRIPR; Calmodulin-binding transcription activator 5-like protein
STRINGAES919480.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42883459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16150.10.0calmodulin binding;transcription regulators
Publications ? help Back to Top
  1. Ye J, et al.
    Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes.
    Plant Cell, 2009. 21(12): p. 3868-84
    [PMID:20023198]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]
  3. Lan Y,Liu X,Fu Y,Huang S
    Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips.
    PLoS Genet., 2018. 14(11): p. e1007789
    [PMID:30418966]