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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Tp57577_TGAC_v2_mRNA17191 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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| Family |
ZF-HD |
| Protein Properties |
Length: 461aa MW: 51576.5 Da PI: 8.2654 |
| Description |
ZF-HD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Tp57577_TGAC_v2_mRNA17191 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | ZF-HD_dimer | 92.7 | 3.3e-29 | 281 | 335 | 4 | 59 |
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59
++YkeClkNhAas+Gg+a+DGCgEfm+s ge+ t +alkC C+CHRnFHR+e e+
Tp57577_TGAC_v2_mRNA17191 281 AKYKECLKNHAASIGGNATDGCGEFMSS-GENDTLEALKCCVCNCHRNFHRKEIES 335
68*************************9.8888*******************9876 PP
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| Protein Features
? help Back to Top |
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| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| Gene3D | G3DSA:3.40.830.10 | 1.4E-96 | 5 | 260 | IPR004183 | Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B |
| SuperFamily | SSF53213 | 3.53E-91 | 6 | 260 | IPR004183 | Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B |
| Pfam | PF02900 | 9.3E-56 | 6 | 260 | IPR004183 | Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B |
| CDD | cd07363 | 4.96E-129 | 6 | 260 | No hit | No description |
| Pfam | PF04770 | 4.1E-26 | 281 | 333 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
| TIGRFAMs | TIGR01566 | 4.3E-28 | 282 | 333 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
| ProDom | PD125774 | 2.0E-20 | 282 | 343 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
| PROSITE profile | PS51523 | 25.538 | 283 | 332 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
| Gene3D | G3DSA:1.10.10.60 | 7.7E-24 | 383 | 453 | IPR009057 | Homeodomain-like |
| SuperFamily | SSF46689 | 1.49E-13 | 388 | 453 | IPR009057 | Homeodomain-like |
| TIGRFAMs | TIGR01565 | 5.5E-23 | 392 | 449 | IPR006455 | Homeodomain, ZF-HD class |
| Sequence ? help Back to Top |
| Protein Sequence Length: 461 aa
Download sequence Send
to blast |
MALKETFYIS HGSPTLAIDE TIPAWKFLTS WKEVFPHRPS AILVISGHWD TSVPTVNVVN 60
HNETIHDFGG FPRSMYKLKY PAPGAPKLAK RVKELVEASG LSRVDEDKKR GLDHGTWVPL 120
MLMYPEADIP VCQLSVSSNK DGTYHYNLGK ALAPLKDEGV LIIGSGSATH NLRAMAPRGS 180
PTPAWASAFD SWLKESVVEG RYDDINHYEE KAPYAKVAHP WPDHFYPLHV AMGAAGENSK 240
AKVVHESWDG GAFSYASFGF TAASYNSFIE ASKDMEKKLV AKYKECLKNH AASIGGNATD 300
GCGEFMSSGE NDTLEALKCC VCNCHRNFHR KEIESDSQHY AISLIPDHNI NAPFLAHLSP 360
NNKSGSTSPS EQSYYEKDCI KEDENRTEKM IKKRSRTKFS KEQKEKMLCF AEKAEWKIQK 420
LEESVVHKFC LDIGIKRRIL KVWMHNNKNT FAKRNISSTS *
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| Functional Description ? help
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| Source |
Description |
| UniProt | Opens the cyclic ring of dihydroxy-phenylalanine (DOPA) between carbons 4 and 5, thus producing an unstable seco-DOPA that rearranges nonenzymatically to betalamic acid. Produces mainly (S)-betalamic acid. {ECO:0000269|PubMed:22270561}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC139852 | 0.0 | AC139852.18 Medicago truncatula clone mth2-8n13, complete sequence. |
| GenBank | BT137627 | 0.0 | BT137627.1 Medicago truncatula clone JCVI-FLMt-1P8 unknown mRNA. |
