PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA16953
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C2H2
Protein Properties Length: 292aa    MW: 33790.1 Da    PI: 9.2277
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA16953genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.27e-06109129323
                                ETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                                C+ C+k Fs++  L  H+r+H
  Tp57577_TGAC_v2_mRNA16953 109 CHVCKKNFSSNKALYGHMRSH 129
                                ********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.25E-65583No hitNo description
PROSITE profilePS501579.7436082IPR007087Zinc finger, C2H2
PfamPF139123.9E-46083IPR007087Zinc finger, C2H2
SMARTSM003551.56082IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806282IPR007087Zinc finger, C2H2
SMARTSM003550.065107129IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.411107134IPR007087Zinc finger, C2H2
PfamPF139122.0E-6108131IPR007087Zinc finger, C2H2
SuperFamilySSF576674.55E-5108132No hitNo description
PROSITE patternPS000280109129IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MDCKKKKNKL DDGSTHQDTR ANSMKPIEKK KSLASTSNSC KVYDKPKGLH QEGSTSSKIY  60
KCEFCNKIFG CGKALGGHKR FHLQLLRKEN EAKARVSFNS SNYDGKQICH VCKKNFSSNK  120
ALYGHMRSHP EREWRGIHPN KFNYNIDYDY DDDDDDDNHD QDQYFIGAPK KLVIDDDESI  180
TWPPRFIKTN KRGRSYEVDN AAQILMHMSR AKILEEKLYE NLDYEEKVLP STSTLVDDNI  240
DETKLKKRKM LVKLKNPFLA SKEKNLNRYQ CEIGESSQSK SRIVRAFDLN E*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA16953
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003618052.12e-94zinc finger protein AZF1
TrEMBLA0A2K3MA951e-178A0A2K3MA95_TRIPR; Tapetum-specific zinc finger protein (Fragment)
STRINGAET010117e-94(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97372437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56200.16e-15C2H2 family protein