PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA16607
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C2H2
Protein Properties Length: 220aa    MW: 24543.5 Da    PI: 7.9119
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA16607genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.23e-055476123
                               EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                               y+C+ C k F++   L  H+++H
  Tp57577_TGAC_v2_mRNA16607 54 YTCSFCRKEFKSAQALGGHMNVH 76
                               9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.74E-75180No hitNo description
Gene3DG3DSA:3.30.160.603.7E-45278IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.3445481IPR007087Zinc finger, C2H2
PfamPF139127.5E-65477IPR007087Zinc finger, C2H2
SMARTSM003550.0035476IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805676IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:0009755Biological Processhormone-mediated signaling pathway
GO:0010093Biological Processspecification of floral organ identity
GO:0010160Biological Processformation of organ boundary
GO:0042127Biological Processregulation of cell proliferation
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MMKKNNMSTS LKSYHHHTYY NNNPIITNKS PSHSNNGSSS EDYMNGYPWP PRSYTCSFCR  60
KEFKSAQALG GHMNVHRRDR ARLRQSSPPT HEVQPPTQGS SMLNLNNPTN PNNFFSNSSS  120
SSPLSSSSTL ATNLKPITCT LPLFVVDGIL LNPTLSKMTK EPLRKSNMEQ YDDLACEDEC  180
GMVKKGEILR MDLEIGLPGD FDDNNLDLEL RLGTTTYSN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A5e-134976229superman protein
2l1o_A5e-134976229Transcriptional regulator SUPERMAN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA16607
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1515987e-68AC151598.2 Medicago truncatula chromosome 2 clone mte1-49g8, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003596336.22e-85transcriptional regulator SUPERMAN
TrEMBLA0A2K3NBZ51e-160A0A2K3NBZ5_TRIPR; Transcriptional regulator SUPERMAN-like protein
STRINGAES665875e-89(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28433171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23130.15e-23C2H2 family protein