PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA1659
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C2H2
Protein Properties Length: 690aa    MW: 78615.3 Da    PI: 5.69
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA1659genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.20.0011542566123
                               EEETTTTEEESSHHHHHHHHHH..T CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirt..H 23 
                               + C+ C+k ++  ++++ H+++  H
  Tp57577_TGAC_v2_mRNA1659 542 FYCELCNKQYKLAMEFEAHLSSydH 566
                               78*****************987555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.90.70.102.0E-6247320No hitNo description
SuperFamilySSF540018.77E-5554320No hitNo description
SMARTSM008485.8E-759106IPR013201Cathepsin propeptide inhibitor domain (I29)
PfamPF082461.3E-1062105IPR013201Cathepsin propeptide inhibitor domain (I29)
PfamPF001121.2E-37133320IPR000668Peptidase C1A, papain C-terminal
SMARTSM006451.1E-32133335IPR000668Peptidase C1A, papain C-terminal
CDDcd022486.98E-53134320No hitNo description
SMARTSM004433.5E-19445490IPR000467G-patch domain
PROSITE profilePS5017416.87447492IPR000467G-patch domain
PfamPF015856.9E-16448488IPR000467G-patch domain
PfamPF121711.8E-5542569IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS000280544566IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006508Biological Processproteolysis
GO:0003676Molecular Functionnucleic acid binding
GO:0008234Molecular Functioncysteine-type peptidase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 690 aa     Download sequence    Send to blast
MDFSDFLCIV SSSRSFSIML CTFSIILLYP TFSEGSAVSP KPFEFNETIP TFFSEASDKL  60
LNQREMIKRR EIFKKNLLYI QKFNSQGNNT YRLAINKFAD MNNEDMSVCE QEEPSGLLAS  120
EKIVSFNISE EDVPNSFDWR EHNAVSPVRD QGTCGNNLDF LYIVFEWFLL GLCCNSAMES  180
LFYIKGVFTE MTLLSPQQLI DCDTQSNECY GGLAQKAFRY VSQEGIATED DFPYEGVKQS  240
CDPIEDVDKL YIDGYTTLGT DEWSLRTAVS RQPVAASIRI SEDFRYYDNG IYQGACGNQG  300
HAVLIVGYGG EIDEEKYWIV MRLCLTAEKE HILTIKNPKK KILKKSASSS YQISNLCPRR  360
FGVALNSTQA KSSAATISQH KMDYRWTKGK NESGGRHRKQ FKKDRVYEES LIDDLSDDFR  420
LPRNQRPTEN VDLDNVEQAS LDTQITSSNI GFKLLQKMGW KGKGLGKDEQ GIVEPIKSGI  480
RDPRLGVGKQ EEDDFFTAEE NVQRKKLDIE LEETEENVRK REVLAEREQK IQTEVKEIRK  540
VFYCELCNKQ YKLAMEFEAH LSSYDHNHRK RFKQMKEMHG SSSRDDRQKR EQQRQEKELA  600
KFAQIADAQK QQRLQLQQES GSTPVSASAS SESRTATALT DQEQRNTLKF GFSAKGTAFK  660
STVGSKKPNV SKKPNVPVAS IFGNDSDEE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ef4_A8e-356835554345Cysteine protease
5ef4_B8e-356835554345Cysteine protease
5egw_A8e-356835554345Cysteine protease
5egw_B8e-356835554345Cysteine protease
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1395404RHRKQFKKDR
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA1659
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59772428