PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA16542
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C2H2
Protein Properties Length: 413aa    MW: 46658 Da    PI: 5.8205
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA16542genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.62.7e-07147168223
                                EETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                                 C++Cgk F+r  nL+ H+r H
  Tp57577_TGAC_v2_mRNA16542 147 FCEICGKGFKRDANLRMHMRAH 168
                                6*******************99 PP
2zf-C2H2110.0014232255123
                                EEETTTT.EEESSHHHHHHHHHHT CS
                    zf-C2H2   1 ykCpdCg.ksFsrksnLkrHirtH 23 
                                y+C+ C+ k +s  s+Lk+H++ +
  Tp57577_TGAC_v2_mRNA16542 232 YSCNRCNkKKYSVVSDLKSHMKQC 255
                                99*******************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.12E-6142169No hitNo description
PROSITE profilePS5015711.863146173IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.3E-5146168IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0015146168IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280148168IPR007087Zinc finger, C2H2
SMARTSM0035531194227IPR015880Zinc finger, C2H2-like
SMARTSM0035591232253IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MSNPNPNSHN PTQILHPHQD PNSNTADPQV PLRNLSLVRT RIDSLRTFLS QSINTNTPIT  60
NDQITVVSNQ IVSAIHHTIV NAAALVSYSQ NLTVPGSSIF PPPSSKLDSK IEPAKDKVDD  120
CDDYLIDDDC EIVELDAVEL LAEHLHFCEI CGKGFKRDAN LRMHMRAHGN KFKTPEALAK  180
PLNDGTQRGR STLFSCPFEG CNRNKKHKKF KALKSVICVK NHFKRSHCPK MYSCNRCNKK  240
KYSVVSDLKS HMKQCGDECK WKCCCGTTFS RKDKLFGHVA LFEGHMPAVV LEECEEKGKQ  300
VMVVEEIEDS IVEKEKSDLG MDEEFFDDFG CIDNYCLEEV LGFHGKQVMV VEEIEDSIVE  360
KEKSDLGMDE EFFDDFGCID NYCLEEVLGF HVLSLCQFIA CTLSYRNRSW EA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA16542
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004502416.11e-165protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like isoform X1
RefseqXP_004502417.11e-165protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like isoform X2
TrEMBLA0A2K3LX670.0A0A2K3LX67_TRIPR; Protein sensitive to proton rhizotoxicity 1-like
STRINGXP_004502416.11e-165(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68553150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.36e-72C2H2 family protein