PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA16525
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family NAC
Protein Properties Length: 457aa    MW: 52095.4 Da    PI: 7.8364
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA16525genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM101.41.2e-3181333128
                        NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyat.gkrknratksgyW 83 
                                 G++F+Ptdeelv++yLk+k+ g+++ + + i++++++++ P++Lp+  k+k +eke +fF++ d  + +  +r nr++k gyW
  Tp57577_TGAC_v2_mRNA16525   8 IGYKFDPTDEELVNYYLKHKIFGEDFMV-SNITHIHLLNFAPSELPAklKMKPDEKEGFFFTCLDLMKMNkITRCNRKAKGGYW 90 
                                69***********************999.77***************534666788899999998876665278*********** PP

                        NAM  84 katgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                k +gk + +++k +++++g kkt  fy+   +  ekt+Wv+hey++
  Tp57577_TGAC_v2_mRNA16525  91 KISGKGRIIKKKgTNNAIGRKKTVLFYT---SLHEKTNWVIHEYHA 133
                                *******9999866778**********3...34468********96 PP
2NAM1341.1e-411903221128
                        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.....kvkaeekewyfFskrdkkyatgkrknratk 79 
                                +p G+rFhPt+eelv +yL++k++g++  + + i+ev+++++ePw+Lp      k+++++++wyfF++ d ky+t++r  r+t+
  Tp57577_TGAC_v2_mRNA16525 190 MPIGYRFHPTEEELVGHYLEHKLAGNDSIV-SNITEVNLNSIEPWELPVmlalsKTTSDDSKWYFFTTDDLKYKTSTRCIRTTN 272
                                699************************666.78***************5477776677889*********************** PP

                        NAM  80 sgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                +gyWk+tg ++e++ k +++++g+kk++vfyk   ++ ekt+W++h+y++
  Tp57577_TGAC_v2_mRNA16525 273 AGYWKKTGITREIKIKgTNNVIGTKKIFVFYKHCGSHVEKTNWIIHQYHA 322
                                **************9967778************999************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100536.7556153IPR003441NAC domain
SuperFamilySSF1019411.06E-357153IPR003441NAC domain
PfamPF023659.3E-219132IPR003441NAC domain
SuperFamilySSF1019414.97E-44189339IPR003441NAC domain
PROSITE profilePS5100544.119190340IPR003441NAC domain
PfamPF023651.1E-22191321IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
MAATKSIIGY KFDPTDEELV NYYLKHKIFG EDFMVSNITH IHLLNFAPSE LPAKLKMKPD  60
EKEGFFFTCL DLMKMNKITR CNRKAKGGYW KISGKGRIIK KKGTNNAIGR KKTVLFYTSL  120
HEKTNWVIHE YHANEAICPH NKTNLVLCRL MRKCERVTHS SSHVSAADFE KQPMMDLDQD  180
NKTLHILGTM PIGYRFHPTE EELVGHYLEH KLAGNDSIVS NITEVNLNSI EPWELPVMLA  240
LSKTTSDDSK WYFFTTDDLK YKTSTRCIRT TNAGYWKKTG ITREIKIKGT NNVIGTKKIF  300
VFYKHCGSHV EKTNWIIHQY HAINVPDNKR NFVLCRLMEK TEVVRDELMY DEGASNHVAA  360
GAELESIADL TTNVCGSPEV TMEYNLLASP HEDDYSFPEA TNQTPYFEGL TSSNAHFKTE  420
NSNAGFPFET DQESFQVFKG FSTVVFVVAA IITFKS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A4e-28934019168NAC domain-containing protein 19
3swm_B4e-28934019168NAC domain-containing protein 19
3swm_C4e-28934019168NAC domain-containing protein 19
3swm_D4e-28934019168NAC domain-containing protein 19
3swp_A4e-28934019168NAC domain-containing protein 19
3swp_B4e-28934019168NAC domain-containing protein 19
3swp_C4e-28934019168NAC domain-containing protein 19
3swp_D4e-28934019168NAC domain-containing protein 19
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA16525
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20652586
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.14e-36NAC transcription factor-like 9