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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Tp57577_TGAC_v2_mRNA16456 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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| Family |
Dof |
| Protein Properties |
Length: 260aa MW: 28666.8 Da PI: 8.5729 |
| Description |
Dof family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Tp57577_TGAC_v2_mRNA16456 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-Dof | 125.4 | 1.8e-39 | 20 | 79 | 2 | 61 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
++++++cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknkk+
Tp57577_TGAC_v2_mRNA16456 20 PQEQINCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKKV 79
6899*****************************************************986 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009639 | Biological Process | response to red or far red light |
| GO:0009845 | Biological Process | seed germination |
| GO:0005634 | Cellular Component | nucleus |
| GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 260 aa
Download sequence Send
to blast |
MEGLAPNSCP RQGLEKKARP QEQINCPRCN STNTKFCYYN NYSLTQPRYF CKTCRRYWTE 60
GGSLRNVPVG GGSRKNKKVI NPSSTKIPDL NPPTLVQVSP LSNSQNPKMQ GGQDLNLAFP 120
SMENYHQHHH GMSSYVEMHN NNESSSSALD LLRSSMASRG LNPYANNNNT LMTNSNTIFP 180
SGFPMQEVKP SLGFSIDGIN GNRSYDDHVH VQEGGGGRLL FPFGDVNKQL STSGVEVEHN 240
KEQGNSTGFW NGMIGEGSW*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor specifically involved in the maternal control of seed germination. Regulates transcription by binding to a 5'-AA[AG]G-3' consensus core sequence. May ensure the inactivity of a component that would be activated to trigger germination as a consequence of red light perception. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | KF220932 | 3e-55 | KF220932.1 Glycine max cultivar Pureun clone 2f2r Dof-type zinc finger DNA-binding family protein (Glyma16g02550) gene, partial cds. |
| GenBank | KF220934 | 3e-55 | KF220934.1 Glycine max cultivar Ilpumgeomjeong clone 2f2r Dof-type zinc finger DNA-binding family protein (Glyma16g02550) gene, partial cds. |
| GenBank | KF220940 | 3e-55 | KF220940.1 Glycine soja cultivar IT162825 clone 2f2r Dof-type zinc finger DNA-binding family protein (Glyma16g02550) gene, partial cds. |
| GenBank | KF220941 | 3e-55 | KF220941.1 Glycine soja cultivar IT178480 clone 2f2r Dof-type zinc finger DNA-binding family protein (Glyma16g02550) gene, partial cds. |
