 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Tp57577_TGAC_v2_mRNA16446 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 269aa MW: 30958.2 Da PI: 4.6214 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Tp57577_TGAC_v2_mRNA16446 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 58.8 | 9e-19 | 63 | 114 | 5 | 56 |
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
+f++eq++ Le++Fe ++ + +++ +LA++lgL+ rqV +WFqN+Ra++k
Tp57577_TGAC_v2_mRNA16446 63 KRFSDEQIKSLETMFETESRLEPRKKLQLARELGLQPRQVAIWFQNKRARWK 114
57*************************************************9 PP
|
| 2 | HD-ZIP_I/II | 114.9 | 4.9e-37 | 63 | 152 | 4 | 93 |
HD-ZIP_I/II 4 rrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeL 87
+r+s+eq+k+LE++Fe+e++Lep++K +lareLglqprqva+WFqn+RAR+k+kqlE++y++L+++y++l+++ e+++ke ++L
Tp57577_TGAC_v2_mRNA16446 63 KRFSDEQIKSLETMFETESRLEPRKKLQLARELGLQPRQVAIWFQNKRARWKSKQLEREYNKLQSSYNNLASKFESMKKERQTL 146
8*********************************************************************************** PP
HD-ZIP_I/II 88 reelke 93
+l++
Tp57577_TGAC_v2_mRNA16446 147 LIQLQK 152
999886 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009414 | Biological Process | response to water deprivation |
| GO:0009738 | Biological Process | abscisic acid-activated signaling pathway |
| GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 269 aa
Download sequence Send
to blast |
MDLKLDYERE CGVGSVYERG GSESNIENME YGQYSYSTEA GEEETYTTSS TSSMRKKKNK 60
NPKRFSDEQI KSLETMFETE SRLEPRKKLQ LARELGLQPR QVAIWFQNKR ARWKSKQLER 120
EYNKLQSSYN NLASKFESMK KERQTLLIQL QKLNDLIQKP IEQSQSSSQV KEANSMESES 180
GNGGTIKCEA EVKPSTSIER SEHVLDVLSD DDTSIKVEYF GMENEPSLMN FAEHADGSLT 240
SPEDWSAFES NDLLGQSSCD YQWWDFWS*
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:15604708, ECO:0000269|PubMed:8771791}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | JX508649 | 0.0 | JX508649.1 Medicago sativa homeobox-leucine zipper protein mRNA, complete cds. |
