PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA16398
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family M-type_MADS
Protein Properties Length: 334aa    MW: 39174 Da    PI: 4.7582
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA16398genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF40.92.6e-13182220644
                                HHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
                     SRF-TF   6 ksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 
                                +s+r  tf kR+ g++ K +ELS+LC++e++ ii+ +++
  Tp57577_TGAC_v2_mRNA16398 182 NSKRRETFRKRKSGLMNKVNELSTLCGIEACAIIYDQNN 220
                                678889****************************98775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.9E-17169228IPR002100Transcription factor, MADS-box
PROSITE profilePS5006615.11169220IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.06E-22171262IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-7171191IPR002100Transcription factor, MADS-box
CDDcd002661.29E-25171253No hitNo description
PfamPF003197.2E-14179220IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-7191206IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-7206227IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MAVQWDQDAR YKILETIIEL SQDNNRPIEE AFELFSDFIN RPRRHSSFME KWIEFVEEIS  60
EEDFEAQDRE SIDSVTTQIE QDSKVYTMED FRKAKVHMDD EEPSQTKETD ATNFERFKET  120
LKELEDECIS ISEEVSAILR RKPQPKRDDA KSLPLPCSIG EKEGETCIYN RKKVKLAYIT  180
CNSKRRETFR KRKSGLMNKV NELSTLCGIE ACAIIYDQNN PQAEVWPSDS GVKRVLSRFG  240
SLSELERSKK KVDQEVFLRE SIEKSCDQLN KKMEENRKKE MANIIDHFIH NGEFNSHLMS  300
KDDLNVFSSF IDENYLKEIN QKMKEMQIET QDP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1170192RKKVKLAYITCNSKRRETFRKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA16398
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2K3P5C81e-109A0A2K3P5C8_TRIPR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1629138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.12e-30AGAMOUS-like 80