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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA16294 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | B3 | ||||||||
Protein Properties | Length: 160aa MW: 18460.4 Da PI: 8.8071 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 37.7 | 3.7e-12 | 61 | 123 | 34 | 96 |
SEEEEEETTS-EEEEEE....EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 34 ktltledesgrsWevkliy..rkksgr...yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 ++++l +++g++W+v+ ++ + +++GW +Fv+ ng+k+g +++F+l++++e v++ Tp57577_TGAC_v2_mRNA16294 61 IKIILHNLKGEQWTVNAVNidSN---VyryHSIRGGWIDFVRGNGIKVGNVCIFELMRENEL--SVRI 123 4799************9444333...333699***********************9985444..5555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 6.9E-14 | 26 | 124 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.67E-16 | 30 | 124 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.10E-14 | 33 | 123 | No hit | No description |
SMART | SM01019 | 6.3E-5 | 35 | 127 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.842 | 62 | 127 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.3E-9 | 62 | 123 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 160 aa Download sequence Send to blast |
MMTIIFVAAE LHFQGHQYVI EKKIAQSYTS TFPYFVKIIQ KFNVGGSCLL EILFCNLFYI 60 IKIILHNLKG EQWTVNAVNI DSNVYRYHSI RGGWIDFVRG NGIKVGNVCI FELMRENELS 120 VRIAEVGKDG LELDIQDEKL DFSVPSARQD VRKRRQWRG* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA16294 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004499102.1 | 2e-40 | B3 domain-containing protein Os01g0723500-like isoform X1 | ||||
Refseq | XP_027189765.1 | 2e-40 | B3 domain-containing protein Os01g0723500-like isoform X2 | ||||
TrEMBL | A0A1S2Y4B7 | 4e-39 | A0A1S2Y4B7_CICAR; B3 domain-containing protein Os01g0723500-like isoform X1 | ||||
TrEMBL | A0A3Q7YF21 | 4e-39 | A0A3Q7YF21_CICAR; B3 domain-containing protein Os01g0723500-like isoform X2 | ||||
STRING | XP_004499102.1 | 7e-40 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF27909 | 2 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24645.1 | 1e-07 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA16294 |