PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA16283
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family B3
Protein Properties Length: 477aa    MW: 53251.9 Da    PI: 8.3511
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA16283genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.91.8e-18321101397
                                TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                         B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                                 ++l lpk+f ++ +  k+ +   +l+ +sg +W+++l  + ++g +++ +GW++Fvk++ Lke+Df+vFk++g+s f   + +
  Tp57577_TGAC_v2_mRNA16283  32 DQQLALPKTFSNNVK--KKLPENAVLKGPSGVVWDIEL--TTRDGIVYFMNGWQQFVKDHSLKENDFLVFKYNGESLF--EILI 109
                                4679******85554..458889***************..99999999999*********************998888..6666 PP

                                E CS
                         B3  97 f 97 
                                f
  Tp57577_TGAC_v2_mRNA16283 110 F 110
                                6 PP
2B335.61.7e-11322403387
                                EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                         B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                                 ++ ps+v k+  l++p+k + +h ++  +s++++l+    ++W  ++ y + ++   lt+GWk F+ +n+L+e D+++Fk  g
  Tp57577_TGAC_v2_mRNA16283 322 VTMRPSHVYKRFFLSFPNKWILNHLSP--SSQDVILRM-GKNEWLGRYLYHNIRNNGGLTGGWKYFALDNNLEEFDVCLFKPAG 402
                                5789*****************999655..566788776.779********77777778***********************766 PP

                                S CS
                         B3  87 r 87 
                                +
  Tp57577_TGAC_v2_mRNA16283 403 H 403
                                5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.55E-2219111IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086315.45320113IPR003340B3 DNA binding domain
CDDcd100174.65E-1922111No hitNo description
Gene3DG3DSA:2.40.330.102.1E-2122111IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.7E-1623113IPR003340B3 DNA binding domain
PfamPF023621.5E-1532110IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-16319415IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.206320418IPR003340B3 DNA binding domain
SMARTSM010193.1E-6320413IPR003340B3 DNA binding domain
SuperFamilySSF1019361.08E-14321406IPR015300DNA-binding pseudobarrel domain
PfamPF023629.1E-10322403IPR003340B3 DNA binding domain
CDDcd100173.62E-15323416No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MVGGGCRSWE EDIYWTHFQF IHFTQFLRND FDQQLALPKT FSNNVKKKLP ENAVLKGPSG  60
VVWDIELTTR DGIVYFMNGW QQFVKDHSLK ENDFLVFKYN GESLFEILIF DGESFCEKAA  120
SYFVRKCGRA AANTEQETAN TEQGVGCSSK KKDTDNSVEE VNTPSNGVDE GVSPEKSSHL  180
NSIRVPFAVP VETTNGKTSN GGVESASPEQ FIADVVTETE PADAATQKTS KRTRRPVYTS  240
APSKKRGRPP GRPPKTSNPD ERALNWVTDA EISPKGSPKG SPKGRSATQE LYTSNRRPVT  300
KTEIENTLQL AQAACTDESL LVTMRPSHVY KRFFLSFPNK WILNHLSPSS QDVILRMGKN  360
EWLGRYLYHN IRNNGGLTGG WKYFALDNNL EEFDVCLFKP AGHMHDLLIL EMSIFRVVEE  420
ITPLAAVHSP GKKRGVKRTP PGATQKEHEF IEGKKRGVKR TLTNGVQTEL ESIEGA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA16283
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0536261e-172BT053626.1 Medicago truncatula clone MTYFT1G-O-17 unknown mRNA.
GenBankBT1426101e-172BT142610.1 Medicago truncatula clone JCVI-FLMt-21M9 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004499104.20.0B3 domain-containing protein REM16-like
TrEMBLA0A2K3PAK20.0A0A2K3PAK2_TRIPR; B3 domain-containing protein (Fragment)
STRINGAES595360.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44462658
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.14e-43B3 family protein